Array 1 40320-39263 **** Predicted by CRISPRDetect 2.4 *** >NC_016783.1 Corynebacterium diphtheriae INCA 402, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40319 28 75.0 25 TCA..CA............A.....C.. GGCGGTCCAGTTCTCAAAGTCCCTG T [40294] Deletion [40267] 40265 28 85.7 33 ..........C...GAC........... CAATACATGAGGATTGACAGTGCTGATTATGAC 40204 28 96.4 33 ..........C................. ATACTGGGTGTGTCTCGTGGATCCGTTAACAAC 40143 28 96.4 33 ..........C................. TTTTGAGCAACCCGCGCCGCGGCGCGGGCAAGG 40082 28 100.0 33 ............................ TCAAAGTTTGCTGGGGCTTCTTCCCACTCAATG 40021 28 100.0 33 ............................ TACGGGTCGACCTCACTGCTGGTCCTGTGGGCG 39960 28 100.0 33 ............................ ACGGGACCTATGCGGGCATTGATTACACCATCC 39899 28 100.0 33 ............................ GTACGTGACGAAAGCTAAGCACTGTGTTTTTGC 39838 28 100.0 33 ............................ ATTTGCGAAACCACCTCTATCTTCGGGACAGCG 39777 28 100.0 33 ............................ TGTTTTATTTTCCGCTCGTGCTTCAGCAACTAG 39716 28 100.0 33 ............................ GACAGCGCGGGCGGCTTCACGGGCCTGTTTGCG 39655 28 100.0 33 ............................ GTCTGGATCGGTGAGCGCATCGGGCTTGGTCAG 39594 28 100.0 33 ............................ GCTGATATGGCCAGCAAATCCGAAGTGCAGCAG 39533 28 100.0 32 ............................ GTGTTGGGCGAAGAGGATGGTTTTTGGGTTAG 39473 28 100.0 33 ............................ GCCCAGGTGAGGGGCCAGAGGCGTGGAAATTTG 39412 28 100.0 33 ............................ TGATTCTCCCTCGTTGTTGTGCACCCCAACCCA 39351 28 100.0 33 ............................ GCCAAAAGCAACCGCACATGGGACAGCCGTACC 39290 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.4 33 GGCTCATCCCTGCTAGTGCGGGGAAAAC # Left flank : TACATCAAAAAGCTCGAAGCGATCAGCGTAACGATCCAAATAGTCTAGGACGACCTGATCTTTCCCTTTTCGAGCAAGACGACGTCTCATCTTGTTGAACCATTCAAGAAAATCAAAAGGTTCCACGTCCATGTCGATATCCATGGAATGGGCACGCCAGAAAATAGCCAGCAAAAGCCGCATCACAGCATAGTCTTGAGCCGGGGACTCCCCCTGAATATAGGCAACCTGCACCTCCCCCGCGAAAATATCTCGTATTCCAACTGAAATCTGGTTACCTTGAGTATCAAGAGCCAGAATCCAGCGGATCTCCAGTAACGAAGCCATCACCAACTCCTTCCTGATTGTTTTAAAACTCCCAACTTAGGAAGCACTTTTCCACAGAATACACTCTATAGATATTAAAAGTTAGTTTTTTCAAAATTTTTTAGTAGAGCCATCATTTACTGATTTCTCTGAATGAAAAACACAGATTCCAAAACCCGTTCTTCAACAAAGAT # Right flank : ACTTATCAAGCTGCACGTTTAGAGCCAGTTAGAGCTTATTACATATAACTTTGTTTCAGCAATTTTTCTGCTTCATCTTTATTTCTACTCTTTTAGGATCAGCCATTCACCCAAATTTGCTTAGTCCTTTCTTCTAGCCATAGGCTGGCATTGTTCCCTGCGATCAGGGATGAGCCTTTTTAATATCTCTACAAGATTTACATAGGCATACTTCCCCGCACCAGCGGGGTTTCCTTTTATGCGTCTTCCTTTGGGCAGACTTCCACCTCTAATCCACGTTCATTGGTATAACGCACTAGGAATCGACCTACACGAGCCTCTCCTCTTTCGTCGAAAAGCAACGCAACTTGGCCTTTAATCAAACCGGATCGTTGCCATTCTGGTGGTGTTTGTGCTTCGAGCGAATCAATAACGGCATTAAAATCCGAATCTCTACGTGTCATTCGGGTTGGCAGGCGCACTGTGTTTCCAGCCAATGCCTCAGTTTCTTTCCAAGTAAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCATCCCTGCTAGTGCGGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //