Array 1 148-4213 **** Predicted by CRISPRDetect 2.4 *** >NC_000917.1 Archaeoglobus fulgidus DSM 4304, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 148 30 100.0 38 .............................. AGCCTTTCAGCCCTAGTGTGAGTGTCAGGTTTACTCTT 216 30 100.0 38 .............................. GTTTGTTAAGGGCTTTGATTTGCTCCTCGGTGGCTCTG 284 30 100.0 37 .............................. TAAAGCAGTTCACCCCTGTTACTGGTTTAACTGCCTT 351 30 100.0 35 .............................. GTATTTGAATCAATGAAAAGAAATCTTACCTCGTC 416 30 100.0 36 .............................. AGTCTTCTGGATGGGTCACAAGGGAGACATCGAGGC 482 30 100.0 39 .............................. TCAGCAAGGTTACGTCGGAGATCCTCGAAGAGGGTATCA 551 30 100.0 36 .............................. CGAGGATTGCTGCCAAAGAGAGCGCCTCGTTCTTCG 617 30 100.0 38 .............................. AAAGTGAACATGCTTAAAGAAATGCTGACAGAAATTGA 685 30 100.0 36 .............................. AGCGAGGAAGAGCTTGACGAATTCTTCAAAAGCGGA 751 30 100.0 40 .............................. TTGCATTTACATCGGCAGAATTGGTCTCGTCGGAAGGCAT 821 30 100.0 42 .............................. CGGTTCTCTTACGTACTCATGCGAGAAGTGAGACTCGCGTTG 893 30 100.0 38 .............................. AGCAAGTCGTGAAACTGAGCAGTCAAAACAGATCGTTA 961 30 100.0 35 .............................. TTTTCCCATACAATTACGACTTCGCCGGAAAAAAA 1026 30 100.0 37 .............................. AGCGAGTTCGACCACGTCGTAGGTCTGCTGTCGGCAA 1093 30 100.0 38 .............................. TGTTTGAAGTAGTTGAATACACCGTTGTGCTGTTTGTT 1161 30 100.0 39 .............................. AGAGGGAGTATTAGGGCCATACTGGCCGGAGTTGTGGTT 1230 30 100.0 41 .............................. ATTCCAAATTGCGGAAAAAGATTCGAGGGCAGTTACTTCCC 1301 30 100.0 39 .............................. ACGTCGTTTATTGCCGTAACGCTAACACCATACTCAAGA 1370 30 100.0 40 .............................. AAAGCCGTCCAGCGATTGTTTTCATCCGCACCGATAATAG 1440 30 100.0 36 .............................. GGTTTAGACTTCCAGCAGGTAAGACATTCAAGGTTC 1506 30 100.0 38 .............................. GAGGTAATAGCTGCGAGGGTCAAGCAGGTTTACGAGAA 1574 30 100.0 39 .............................. GAGCAATATTAGAAGAACTCATGGCCACTGGCGACTTCA 1643 30 100.0 40 .............................. TTACATATCCATTCACAGCACCTATGGCTGCCATCAAAAT 1713 30 100.0 41 .............................. CTTCACAACCAGCCTGACCTCAATCTCTCCTCTCTCTTCGA 1784 30 100.0 37 .............................. CATGGACATTCAGGCACAGCCAGAGCAAAAGACCTTC 1851 30 100.0 40 .............................. TTCGTTAAGCTTTTCTCTAATTAGATTAACCGTTTTCGTA 1921 30 100.0 36 .............................. TTTGATGTGAAAACCGCCCCTAAGCTTCCCGTTCGT 1987 30 100.0 39 .............................. ATCCTCACCGTCGGCGTGTCTTTCCCATTCAATTTCGGC 2056 30 100.0 42 .............................. CATCAGCTTATGCATGTAATAAGCGAAGCTACATAACTGCAC 2128 30 100.0 39 .............................. ATCTATGTAGAGAAGGTATCCGATTTCATAGACTGGAGA 2197 30 100.0 38 .............................. TATTTTTTTAAAAAAATATATAAAAAAGGAGGTGATGC 2265 30 100.0 40 .............................. CTGTTCATCCTGTTCGGAGTGTTGATTTACGCAATTCTCA 2335 30 100.0 38 .............................. TCGCTCTCTTGGTAGGTTACTTTGTCTTTACGGAGGTT 2403 30 100.0 36 .............................. CGGTTTCCTCGCTGATCCGACTCTTCAGCCATCGCT 2469 30 100.0 39 .............................. TAAGCGTCGCTGGGCGTCGCTCGGTGGTGGAACGGGTTA 2538 30 100.0 38 .............................. GCCAGGATAATTGAGCGTGTTGTAGAGTCTGCCGCTGT 2606 30 100.0 38 .............................. ATTTCTGGTCGTGTTTACAAACTTAACGAACGCTACGA 2674 30 100.0 36 .............................. CCAGCATTGTTCCAGCCGCAGCCAAACCGAGAAGGG 2740 30 100.0 36 .............................. GCCGTTTTTCAGCCTCTTTGCCTTCATCCAGCATTT 2806 30 100.0 38 .............................. CCTCCTTTGGGTGGAGTTCCAATCAGGAACGTGATTGG 2874 30 100.0 39 .............................. AAAGAATGACCGAACACCTTAACCTCTCTATAACCCCAC 2943 30 100.0 39 .............................. CTCTTCCCAACGTCACCCACAGATAACTATCTGGAGATG 3012 30 100.0 35 .............................. GTAACCATAACCTACAAGTGCGGAGTGCCCTTGCA 3077 30 100.0 41 .............................. TACTGCTCCCAGCACAAGGCAGCGCAGGCGTCGTGGTCTTC 3148 30 100.0 37 .............................. CCTACGGCCGCAAATCGGACAGAGCTTATCCATCCTG 3215 30 100.0 38 .............................. TTTGCATCTTCACCGGCATTGTCAGCTGCGAACTCTGA 3283 30 100.0 42 .............................. ATAGCTCTCTGTAACTCACTTCTTCCCCATACCATGTTTCTA 3355 30 100.0 38 .............................. AGCATCTTCGTCTTCTTTATCCTCTTCAGGAGCTCTAA 3423 30 100.0 37 .............................. GAAGTTTGCGTTTGTTCCAGAAGTTTGTAGAGTGCCA 3490 30 100.0 38 .............................. AATGCTAATCGGATTCTCTGGTCCATCTGCAAGTGGCA 3558 30 100.0 37 .............................. TGCTTCATCTTTCTCCAACACTTCTACAATCTTGACT 3625 30 100.0 39 .............................. AAGACTACGACTCTTGGTAATCCATCGTTGCCTCTAATC 3694 30 100.0 44 .............................. GGAACCCCGTAACTGGCTGCCTTCACGGCTGCGATTACTGCTAC 3768 30 100.0 38 .............................. ATCAAGAGCCCATGCCGTCAGAGAATGCGTTGAGGAGT 3836 30 100.0 40 .............................. TCTGATTTTTCGGCAACAACAAACCTGAACTCAGAATTGC 3906 30 100.0 39 .............................. CCTTATCTCATCCTCAGCACCATAAGGCATTTGACCCTT 3975 30 100.0 38 .............................. CGAGACATTAACACAATTTATTGGGCATGTCCTGACGG 4043 30 100.0 38 .............................. GCAGACGACGTACACTACTGGGGCGTTGTCAAGGAACA 4111 30 100.0 43 .............................. TAAGAACATCTCATAAACTTGTGTTGGACTCGGTAGCTCCCAA 4184 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 60 30 100.0 38 GTTGAAATCAGACCAAAATGGGATTGAAAG # Left flank : GAAAATGGTTTAATCGGAAATTGAGTAGGAGGATAAAAGTCGCATGCTATTATAAATGAGATGCACTTTCGACACCTCGCGGAAGTATATAAATGAAAGAAGCCCTCAGAAAACTTTAAATTGGAAATAGAGGGAAAATTACTGATGG # Right flank : GGCAATGGCGACTTTTGCATAGGTGGCAAGCGTGGCAAGAGGAAAAAGATTTTCTAATTTTTTTATGAATGTAGATTATGAAAGAGACGATTCAGCTTGCTATAGGGGTGATGCTGTTGGCCATGCTCGGTTGCTACATCTACATTACTGAGTTCTATCACTACGAATCAACTGAAGAGAGCTCAAAAGCTGCGATTGAATATTTGAATCAGCTTAGAGCTCAGAATGGCCTGCCTCCTGTAAAGTGGAATAAAACTCTTTACGAGTTTGCGCTGGAAAGGCTTGAAGATATGCATGAAAGAGGCTATTACAGTCATTATGACCCTGTTACGCATGAGACGCTGATTTACAGATATGTTGAGGGGTATGTTGGAGAGTGTATCTTGAATGGTGTAAGAGGTACAAATCTTCTCTCCAATGGGCTTCAGTCATTATTTGGCTATGAAGAAGAAGCTATAGATATCTGGTCTAAAAGCACCATGCACAAACTCATTCTCACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAGACCAAAATGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 2 401591-398369 **** Predicted by CRISPRDetect 2.4 *** >NC_000917.1 Archaeoglobus fulgidus DSM 4304, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 401590 30 100.0 36 .............................. ATTGCCGAAGTGGTGCTTAGAGCTTTCAGCAAGGCG 401524 30 100.0 37 .............................. CAGCAAGTGCGAGAACTACTCTCCAAAACGTTTTTGA 401457 30 100.0 38 .............................. GACGACGACTCGAGGGTTCTTCTCTCCCTCGATCAAGG 401389 30 100.0 38 .............................. CAGTAATAGCAGCCGCTGTTGCCAGAGGTGGAGTTCAA 401321 30 100.0 37 .............................. ATTGTTCTGTCCCAAATCGTTCTGAGAGCTGTTAATG 401254 30 100.0 36 .............................. CGCTTTGAGAGTAATACGTTTTGACTTGATTGAACA 401188 30 100.0 36 .............................. CTTAACGAGAGAGGAGATCGAACAACTGTTGCCCTA 401122 30 100.0 37 .............................. CTTTTAACTATTGCCTTACCGTTAGGGAGCGTCGTGA 401055 30 100.0 37 .............................. GACATAATCTTTGCCAACTCCACCAAGAGGGGGGTTT 400988 30 100.0 36 .............................. AGCGATTTTACGGGCGGCTTCGAGAGTCTGTACTTG 400922 30 100.0 36 .............................. CGACCCTTTCCAATGCGAGGGCTTTGAGATTCGTTA 400856 30 100.0 36 .............................. TGGAACTCTCCGACATAGAGCAGCTTCAGCTCGGCC 400790 30 100.0 35 .............................. ATAAAGGAGGCATACCTCACGAACTCCAGAGGGGA 400725 30 100.0 38 .............................. AAGGGCAAGAGGAGAAGCAACTCATCAAATCCCCCGAA 400657 30 100.0 42 .............................. TTGTATTGCTATGGCAAAGTGAGTGTTGAGGCAATTGGCGAT 400585 30 100.0 36 .............................. ACCTGTCTTTGTCCAATAAACATATCATTCCTCCTG 400519 30 100.0 37 .............................. AGTATAATTTGCTTGAGAACAATAGCATAGTTACGGA 400452 30 100.0 44 .............................. GGAGCCGTTGAAGTCTGCGAGCATCGGTTCAACGACGTGGCTGA 400378 30 100.0 41 .............................. GGTTTAGACTTCCAGCAGGTAAGACATTCAAGGTTCTTAAA 400307 30 100.0 38 .............................. ATAAACAGCGAAGAACGGGTCGTTAAGAGGGCTAAATA 400239 30 100.0 40 .............................. TCGGGAACTGCTAATATCTCGATTGCTGACGACGAGATTG 400169 30 100.0 37 .............................. GCCTTCTTTGAGGTCTGGATCTGGCTTCAGGATCTTA 400102 30 100.0 41 .............................. GGGTCGCAACCGCTGACGGCTCGGTGGTTTTCAAAACGACT 400031 30 100.0 41 .............................. TCTTTTTTTAGAACTCGGTAAGCCTCCTTGATGAACGCCTC 399960 30 100.0 38 .............................. TCTGGACTCCCTCTTCTCTTCCTCTACGACGCCGAACG 399892 30 100.0 36 .............................. AGGACACGAAGGCTCTGAGGAGGTTTCAGGGGAGTA 399826 30 100.0 35 .............................. GTTGTCGTATTCGGCGATGGGCTGCTCCCCCGCAG 399761 30 100.0 37 .............................. CGTGAAATACTCCATCCCAACGCTGAGCAGCTCGGTA 399694 30 100.0 36 .............................. AGAGCAATCAAAAAATAGAAAGGTTACAAGGCACCT 399628 30 100.0 37 .............................. TCGGACTTCGAGGGGTTTGACTGGGTGATAGTCGGAG 399561 30 100.0 37 .............................. TGGCATGGGAAGAAATCGTGGTATCTTGTTTTGCCGG 399494 30 100.0 40 .............................. AGACATACAGAGACATAAATCTTGGAGTAAGCAGACTCAG 399424 30 100.0 42 .............................. AATATACCACTCTGGCCGAATCGATCAGAAGAGAACTGACAA 399352 30 100.0 42 .............................. CGTTAAGGCGAGTGTTAGCGGTAAAGCCTCTGAGCTCAGCAA 399280 30 100.0 38 .............................. GGAGTTGCTTTGACTGGTAATCTGTTCGATCAGATTGT 399212 30 100.0 37 .............................. CATAATCTTCTTGAAAGTCACGGGAATGTGGAACTTC 399145 30 100.0 38 .............................. GAAAGGATACAAATGTCAAACAACCGATAGTTGAGAAG 399077 30 100.0 36 .............................. GACGTCGTGGAATAATGCGACAAATATGGCTTCATC 399011 30 100.0 41 .............................. AAAACACTTTCCACAAGCGCTTAATCCGCCACGTCAATGTG 398940 30 100.0 38 .............................. GAGTTTCAGAAGATGGCGGAGGAGTTGAGATTACAGTC 398872 30 100.0 37 .............................. GGTTCTACCGAGCAAAGAGCCCGACCGAGAGCTTAAC 398805 30 100.0 38 .............................. TAGCCTGCCACGTTCCTGCTAACTCCCCATGCCAGAAA 398737 30 100.0 37 .............................. ACACCAGAACGGCAAACAGAGCTCTCATCCTCCCCCC 398670 30 100.0 38 .............................. TCATAATCGCTTTCCTGATAATGCTGTTAATTCCGCAT 398602 30 100.0 37 .............................. TATTCGTGTATCAGGTGTTCCTGTTGATTCCGGGCCT 398535 30 100.0 39 .............................. CAGTTAGGACAATATACTACTGGTTGAGAGCACATGAAG 398466 30 96.7 38 .........................A.... AGCTCTTGGCCTGCCTCTGAAAGCTCGGAACACAGTAA 398398 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 48 30 99.9 38 GTTGAAATCAGACCAAAATGGGATTGAAAG # Left flank : CCTGCAGTTCAGAGCCCTCTTTCTGTCGGTGAGGGTGCCATCTATGTCAACTGCGATGGCCTTTGGTTTGAACATGATTCCTGTTTGGGGTGTGGGTAATTAAGATTAAGGGTTTTATTGAGAGTCAGTGTGATTGCAAAGCAAGAGGAAATAAATTGAGTTTAGATTTTGGCCAGTTTTAGACCGTTATTCTGCGAAAAATCATCTCAGAGTGCTTGTCACAGTAATTTATCTTGAGTTTTAATTGGGTAGAATTATGTTTTATATTTGGTTATTTTTGGAAATGGATTGTTTTGATTATTTTTTGGCAGGATAAGCTTGAGGAAAAGATTTTAAAGTAGAAATAAGTTCCGGAAAATGGTTTAGTAGGAAATTGAGTAGCAGGATAAAAGTCGCACGCCGTTATAAATGAGATGCACTTTCGACACCTCGCGGAGGTATATAAATGAAAAAATCCCTCAGAAAACTTTAAATTGGAAATAGAGGGAAAATTACTGATG # Right flank : TGGACGTGTAAATCTTCTTTTCGTCATCAGAGATATCTTTTACTTGGACATGCTTCTTGAACCTCCCAAACTCAACGAACAGAACTAAATGCGGGGGGAGGGATTCGAACCCTCGAACCCCTACGGGACAGGACCCTCAATCCTGCGCCTTTGTCCGCTCGGCAACCCCCGCTCAGATGAAAAATTCTGCATAGGATTTATGAATATTGTGGTTTAAAGGGCGATGACTTCATATAACTTTGAAATCCACCTTCTACATGAAAGCCGTAATGCTCCTGAGTGGTGGGATTGATTCCTCAACACTCCTTTACTACTTGCTCGACGGAGGTTACGAGGTTCACGCTCTAACGTTCTTCTACGGCCAAAAGCATTCCAAGGAAATCGAAAGCGCCGAAAAAGTTGCAAAGGCTGCTAAAGTTCGACATCTCAAGGTCGACATCTCTACAATTCACGACCTCATCTCTTACGGGGCCTTGACGGGGGAAGAGGAGGTTCCAAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAGACCAAAATGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 3 1690930-1694181 **** Predicted by CRISPRDetect 2.4 *** >NC_000917.1 Archaeoglobus fulgidus DSM 4304, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1690930 37 100.0 38 ..................................... CTATTCTCCAAATAAAATTATATAACGCATTAACATCA 1691005 37 97.3 37 A.................................... CAGGAGGGACCGGAAACACACGGTTGAAGGGGAACGC 1691079 37 100.0 38 ..................................... TCTATAACTCCTATACGGTCAACATTGTAACCTGGGTT 1691154 37 100.0 39 ..................................... TCTCGCTTGCCCTGATGAAATCGGATGGCTTTGCGTCCA 1691230 37 100.0 36 ..................................... ATCTTTTGCACTTCCTCCTTAACCTTCTTAATCTCC 1691303 37 100.0 39 ..................................... GCTCTGCAGGGCCAGGGTAAGACAATTGCTGACATAATT 1691379 37 100.0 38 ..................................... CTTCAGGTAACCCCTGAACTAAGACCTACTCGGACAGG 1691454 37 67.6 36 A.T.AGCT.CCGTAT...................... CTTCAGGTAACCCCTGCACAATTTCGGCCTTTTTCT 1691527 37 100.0 38 ..................................... GTCTAACAGGCACAGGAGAACACATTGCACCCTTGCAA 1691602 37 100.0 39 ..................................... CCTTCAATATCACTGTCCAGTTTCTTGAAGCACACTGGG 1691678 37 100.0 39 ..................................... ATGTCAACATGTTCATGCCTGCTTCAAAGCCGGATTTGG 1691754 37 100.0 37 ..................................... TTTGGACTATTTCGCCGCAATCTGCACAGACTACTTC 1691828 37 100.0 35 ..................................... GTCTCGCTCAGGTCGGTTAAGGCATCGTTCATCTC 1691900 37 97.3 41 C.................................... AACGTCGTGCTGAACTTAGGAATAGTGATGTCCAACTATCT 1691978 37 100.0 37 ..................................... GAAATCGCTGTATTCATTTGGTTTTTTGAATTGGAAA 1692052 37 100.0 37 ..................................... AAATCTACACCGTTTATTTTAACCGCCTTCATAACAA 1692126 37 100.0 36 ..................................... CAAGCTGTTCTGGTGGCAACGATGCGAGTAAATTCT 1692199 37 100.0 38 ..................................... ATATACTCCTTACCCCCTATCTTCTTGCTTGAAATTGC 1692274 37 100.0 38 ..................................... TCATCCTCTCGTACAGCGTCCTCGTTGAAATGCCGAGA 1692349 37 100.0 38 ..................................... TCCCTCTCCCCACTCTCCATATCCTCGATAACGCTGAG 1692424 37 100.0 39 ..................................... ATTATCAGAGGTGTTGTAATCAAGGACGAGGAGCTGGAT 1692500 37 100.0 37 ..................................... ATATCAGCTCTTTTGTGAACTCATCCGTATAGTATGT 1692574 37 100.0 38 ..................................... AATATCTGATTTATCAGGGCGATGCTTATCTCGGAGAA 1692649 37 100.0 39 ..................................... AACTGATACCACAACTGGTGCACCAACTGAGGTTGCCGC 1692725 37 100.0 37 ..................................... CAGTAAACATTGACGGCCAAATTTATCAGGGAGACGT 1692799 37 100.0 38 ..................................... ATAAATTCCTGATACATATTATTTGAATCAGAACCCAC 1692874 37 100.0 38 ..................................... ATTTTATCTGCATCTCCACACTACCTCTGCAGGAAGCT 1692949 37 100.0 39 ..................................... CAATAATCTCATCATTGCCTGGAATTTCCGAAGTTAGGG 1693025 37 100.0 36 ..................................... TGCAGCCACCAAGTTTGGTGACTTGGCAACCATCTT 1693098 37 100.0 38 ..................................... GATACATGCAAAATATCTTGAGTGAGGTGGTTTGATGG 1693173 37 100.0 37 ..................................... AATGCATCAGATTCATACTCAAGAACCTTCTTAACAA 1693247 37 100.0 38 ..................................... ATATTTTCGTATCCTTGAGAGTATCAGCGATCGATTCG 1693322 37 100.0 35 ..................................... TCATATCACCTGATGAAATTCATCCTTTTCCTTTA 1693394 37 100.0 38 ..................................... AATCACGACCCATTCATATCACCTCTTCTCCAAACCAA 1693469 37 100.0 38 ..................................... TAAATGCTTTCTCACTTCCCTCTTTCTCATATATCTCT 1693544 37 100.0 36 ..................................... GAGCTATCAGCAGATGGGCGAGAGTTTAGGCGGCTT 1693617 37 100.0 39 ..................................... TGCAAAATAGGGGTGGTAGTAATGCGGTATAATTTCAGC 1693693 37 100.0 38 ..................................... ATGCAAAAGAGAAGTTCGGGTAGTGGTAGTGGGGAAGG 1693768 37 100.0 37 ..................................... GTTGCTTGGCCTGCCATCTGAGTCATATGCCCCATCC 1693842 37 100.0 38 ..................................... ATGTCGTTGAACTGGGCTTGGATTTCTCTTATAATCGG 1693917 37 100.0 38 ..................................... CCCTCGAAGCGGGCCTGCTGCTTGAACCTTACGGTTGT 1693992 37 100.0 39 ..................................... ACTGCAGGGGTGTGGACACAAGTGGACCGCAACAGAGGT 1694068 37 100.0 40 ..................................... CAAGTCTTCGATTTCGCCTGCGACTTGTTCAACATCCTCT 1694145 37 83.8 0 .......T..A..T.................C.TG.. | ========== ====== ====== ====== ===================================== ========================================= ================== 44 37 98.8 38 GTAAGAAAGGGAGGCTCCTGAAAATGGAGATTGAAAG # Left flank : ATGAGGTACATGGGGAGCTTAACATTGTAGTAGGGCTTGAGCGGAGGAGAATGCCAGTTCCACCCTCTGAGCTCCTCAGGAACGGGATTCTGCCTGATTCTTGGCCTTAGCTCAAGGGTGAGAAACTTATGCTCCAGCTCGTTAAGAAAGTAAACCATGAATTAATTAGGCATAGCCATACTTATAGTTTTCCACACGATACAAAGGAAGTGATGCCCGAATAGTTTAAGATTTAAACTAATTATTTTTTGATTGTCAAGAAAGTCCAAAATGAATGGAGGGATTTCGTGAGTTTTGATAGAGAATGGAAAGTTTTGGGTGGTGAAAAATTGTGGGTTAGTTTTAAGAATTGGCTGTTGGGTTAACGAAGCTATCCTATTCCGCAAACTGCTCCGGCATCCCTTTATAAATACAGTGTTAGTTTTGAGGTATGCTGCAATGGGCGGGAGAAGGGGGCAGTTAACTTTAAATATTAGGTGAATGGAGGGATTTTAGGGAGG # Right flank : GAACTTCATAAAACAGCACCATTCCATGTATCCTAAATAGTAAATGCTACACGGGCTACCGGAAAGGCGTTTTGAGCGGTTGTGGTGAGAATTCTGCATCACACCTGTAAAAACTTCAACAGCGGGCAGTGCTGTGCCCTAACTGAAAATACATGAAGTTTAAAATTATCAGGAAAGCCGCCGGCGGGATTTGAACCCGCGACCTGGTGATTACAAGTCACCCGCTCTGCCAGCTGAGCCACGGCGGCAGCATGGGGTGATTGAGGCGAAGAGTTAATTAATTTTACTCCACGGTGCTCCTCTCGAATGAGACCATCGCCACGTACAGCATCAACGCTGTGAGTGACAGAAGTATCAGCAGGCTTTGGTCTAAGGGGAAAATCCCGCTGACTCCCGTAAGCAGAACTCTCGAAGATTCTACGGCGTACGTTAGAGGATTTAGGAGAGCCAAGACCTTCATCCAGGCGGGCATGAAGGCGATGGGGTAAATCGCCCCACTG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGAAAGGGAGGCTCCTGAAAATGGAGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA //