Array 1 12496-14510 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJSU01000140.1 Clostridium perfringens strain NobL1 contig00140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================== ================== 12496 30 90.0 36 ...............ATA............ AATCCTATTTCATTCTTTTTTATATCTTCTAATCCA 12562 30 90.0 36 ...............ATA............ AGGTTAAAATAAGAATTTTCAAATAAGCTTTTAACA 12628 30 90.0 35 ...............ATA............ TTGACAACATAAGTAGGGTTGATAAAGCTTTCACC 12693 30 90.0 36 ...............ATA............ AAAGACAAAAGAAAAATTGTAACAAGAATTATTCCA 12759 30 90.0 35 ...............ATA............ ACATTAGTTGAGCCTGAGCCATTTGGTTTTGAAAT 12824 30 90.0 37 ...............ATA............ TTGATTAAAATATCTTTTTTATCTTGTTTATATGGTA 12891 30 90.0 36 ...............ATA............ GATGTACCATGCTTAGCTTTTTTATATTTTCTGCTA 12957 30 90.0 35 ...............ATA............ GCAGTTATATTTGGATCATATGGATCTACATAAAT 13022 30 90.0 35 ...............ATA............ CAGTATGAAATTAAAGAGGCTATTTCCAATCAAGC 13087 30 90.0 37 ...............ATA............ TTGATTAAAATATCTTTTTTATCTTGTTTATATGGTA 13154 30 70.0 7 .............T.AA...AA..C.TC.T AGAAGCT T [13174] Deletion [13191] 13192 29 66.7 25 ...........TTT.A-A.AA.......GT TGTAACTTATAGTGAGATACTTTGG Deletion [13246] 13246 30 73.3 222 .G....T.....A..A....C....A.T.G GAAATTAAATATTATTATGAAATTTAAGTGCTCTAGTATTAATTATTTTACCAGTAAAAAAGATAGTGAGAATATGATCTAAGCATTGAAATAAGAGGATTTAAAGATTATTTCATTTTAGTACTTTGAAAAAGCGTGAAATACTGGTAAAATTATGATATACTTATTGAAATAACTAGGTTTTCATAAAAATCTAATAAGTTAAAATGGCTATTTTACAAG G [13265] 13500 30 100.0 35 .............................. CACTTTCCCTCCTTATTTAATCTTTAGAGTTTCAT 13565 30 100.0 34 .............................. CATATTAAATTAGCAAATTTAGCATAACCTTTAT 13629 30 100.0 34 .............................. AGACATAAGTTATAATCCTAAAGATATGCAATTA 13693 30 100.0 36 .............................. GATAATCCCATATTCTTAAGAATAAGATAAGATAAT 13759 30 100.0 35 .............................. TTTTCTTTTAAGCTGGCACCTTCAACTTCTTGTCC 13824 30 100.0 36 .............................. AGTGATTTTTATATTTTAAGTGAAGCGATAAAAACT 13890 30 100.0 36 .............................. GTTTTTAATTTATTATTTTCTACAACAACGTCATTA 13956 30 100.0 36 .............................. AAAAAACCTTGTAACCAAGCCAAAATTTGTTTAAGA 14022 30 100.0 36 .............................. GCTTCTATTTCTTTTATAACCTTGCAAGTATTCTCT 14088 30 100.0 35 .............................. TCTATAGCACCATCGGTTATTCCAGCATTATGAAC 14153 30 100.0 36 .............................. TAAGCTTTATTAGATAATAAAGCTATTTCATCTGAA 14219 30 100.0 35 .............................. ACCCATTCTGGTTCTACTCCTAGAATGTTTTTTTC 14284 30 100.0 36 .............................. ATAAAAACAGTTTTCATATTTAATCTATCGCCTGTA 14350 30 100.0 36 .............................. TCTAAAGGTGTTTCAACTGGTTCTGCTAATTCATAG 14416 30 100.0 35 .............................. TGAACTAAGATATGCTCACCAGCATCTCTAATTTC 14481 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== ============================================================================================================================================================================================================================== ================== 29 30 93.2 41 GTTGAACATTAACATGGTATGTATTTAAAC # Left flank : ATATTAAAAAGTTGCCAAAATTTATCTTCATAGTTTTAGTACATTATAAATTTAAAAATAAAAGAAAAATAGGTAGATCACATTTTAAGGTCTATCTATTTTTTATAACTTAATTAATAAAATTAACTAAAAAATTTAAAAAAGATAAATATTGGTAAAATTAAAATGGCTATTTTACAGTGGTTTAACATTAACATAATATGTATTTAAACTGTTTAAGCTATAACTTGTAATGTGATGCTTGGGATTGAATATAAAAGAGTAGTTTATCAATAAGAACTTAAATATTATTATGAAATTTTAAGTAATTTAGAGTTAACTATTTTACCAGTAAAAAAGATGTTGAGAATATTATCTAAGTATTGAAATAAGAGAGATTAAGACAAGTTTTGTTTAAGTACTTTAAAAAAGTGTGAAACACTGGTAAAATTATAATGTACCTCTTGAAATAGACAGGTTTTCATAAGAATCTAATAAATTAAAATGGCTATTTTACAAGT # Right flank : TTTTTTATTTTTGAAGATTAATAGATCATATATCTAAGAATTTCTATATTAAAATCTACTTAAAGTTAAGTTAAAAATCCATATATCCTTTTTTATCAGATAATTTTGTTTATACAGGATTATCTGATATTTTTTTAATTTGTTAAAATATGTTTAAAAAAGTATTATTTATTAATAATAATAATTTGTGGTAAAATACTATTGCAAGCAAAAAATGGAAGGAAGGTGTCGCACCTTGGGGAGTTTAGTTTTATGGGAGTTAGGTAAAAAGCAAACATACATTTTTAATAGCAATAAGCTTAAGGATGCTATAGGAGCTTCACTTATTATTAAGGATTTTTCAGAGGATTATTATAATAAAGGCTTAAAGGAAGAAAATTTTATAACAAGAGGTGGAGGAAAAACTATTTATTATTTTGAAAGCAAGGAGGAGTCTTTGGAGTTCATAAAAAGCTTAAGTTTTAATATTTTAAAGGACTATCCAGGCTTAGAGCTTTTAA # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.72, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGGTATGTATTTAAAC # Alternate repeat : GTTGAACATTAACATATAATGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 3699-5236 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJSU01000142.1 Clostridium perfringens strain NobL1 contig00142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3699 30 100.0 36 .............................. TAATCTTTTCTACTTAGAGAAGGATTATGGAAGGTT 3765 30 100.0 35 .............................. CTAGAGAACAGAGTTAAGCTATACTACAAAAATAA 3830 30 100.0 36 .............................. ATAGAATAAGTTGTTGTTTCTTTATCAAGATAATCA 3896 30 100.0 36 .............................. TCTCTATCGATATAAACTGTTTTAGTTTGTATATAT 3962 30 100.0 37 .............................. TACTAATATCTCCATTCAGCTATTAAATATATAGGTA 4029 30 100.0 36 .............................. TAGAGTTAAAAGAAAGAAGGGAACTTGGACTAGAGA 4095 30 100.0 34 .............................. GGAGCAAAACATACTGGAACAGATATAGGTTGTC 4159 30 100.0 36 .............................. TTGATAATAGAGAGCAGGCTAATTTACACATAACGG 4225 30 100.0 35 .............................. GTACAACTGGTAATAGTACTGGACCTCATTGCCAT 4290 30 100.0 38 .............................. AAACTTTAAAACTTTACCTTCCATTAGTGCATCTTCAA 4358 30 100.0 34 .............................. GCTAATTTCAACTCGGAAGTGTGGTGTTCCCCTC 4422 30 100.0 35 .............................. TTAGTTCCTCCTAAAACACTCCAAAAAGTTTTAAT 4487 30 100.0 34 .............................. CTTAATAATTCTTTTAAGCCTAATCCATAACTTT 4551 30 100.0 36 .............................. ATATCAAGGAGAAATTTATCCTTCGTTTTCTAATAA 4617 30 100.0 34 .............................. CAGGAGAAAGATTCAGAATTAAATGGGTAGATTC 4681 30 96.7 36 .....................C........ TTAATTTAATCCTTTCTATTCTTTATTCTTTGTGTC 4747 30 100.0 35 .............................. ACTTTATTTTCTTTTACAAACTCTGCTTCTTTACC 4812 30 100.0 36 .............................. TGGGAAGAGAATTTATTATACTGCACAAAAATATAA 4878 30 100.0 35 .............................. GTTAATAGTAATTTAGATAGTTTAAAAAAATCTAT 4943 30 100.0 36 .............................. AACACGGAAGAGGGGACGTATGAAAAGGTATATACC 5009 30 100.0 35 .............................. GATCCTGAAGGATGTACTTGGGGAGAAGAGTGCTT 5074 30 100.0 35 .............................. CTAAGAATGTGAAAATCTGTAGAATTTATTGCGGT 5139 30 93.3 36 ...............AG............. TGTTCTATGGCCTTTATTTCTATAAGTTCATCTCTA 5205 30 93.3 0 .......C......G............... | TT [5228] ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.3 36 ATTGAACTTTAACATGATATGTATTTAAAT # Left flank : TAAACTTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTTTTTCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGCTACGGAACCCTAGAAAACTTTATATTATTAAGTTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGTTTACTGAATAGGTGAATTTTAGTATTTAATTAATGCATTCTTAGAAACATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATCATATAAAATCACCTTTCAGACCTTGAAATAACTAGATTACAAGTTGATTTTATATTGGTGCTTTAAATTAAAGTGAAACACTGGTAAAATAATAAGAGAGGTGTTGAAATAACTAACTTAAAGATAAATATCAAGAAAAAGAAATGGCTATTTTACAAGC # Right flank : TAAGAACTTTAAATATTAAATTGTTGAAATAGGCATATTGCGATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAACATTTTATTAAATAATTAATATTACAAAAATGTATAAATTTATAAAATAATTATTTGTTTTACAAAATTTATTGGGTAAAAATTATAATTATAACTATAATATGTAATATTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGACTAAAAGATAAATTTTGTAAAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCGTGGAGTATTTAAAGAATGTCTTTAATGCATAAAATATTTTAACCATAACATTAGATGTACTAAACAAAAGATAAACTAAATTATTTGATTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATACATTAGATTTATATAAGGAGGTGAGTATGGTGAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 15215-18268 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJSU01000142.1 Clostridium perfringens strain NobL1 contig00142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 15215 30 100.0 36 .............................. ATAGTTACTGGATCTTCTTTAACCATAGTTGTTATA 15281 30 100.0 35 .............................. GTTAGAGCTGCGTTGACACAACTATTTAATGCTAT 15346 30 100.0 36 .............................. CAATTTATCCCCCTTTAATGATACATTTAATTTCAC 15412 30 100.0 36 .............................. TTTAAACAAGATTGAACATTATCCATTTTCTTTTTC 15478 30 100.0 35 .............................. AAGAAATGCTTTAATAAATCTTATTTGCCACAACT 15543 30 100.0 35 .............................. ATTAATATCCTTGAATTATTGCTTTTCTTTCTTTT 15608 30 100.0 36 .............................. GCCTTAAGCGGCAAGCTTTCTTTTATGCTTTCTGCG 15674 30 100.0 36 .............................. GAATCCAGGATTAACTCATTGTCTTTTCTTATATAA 15740 30 100.0 35 .............................. CAAATATCCTGTATTAAAATATATAGCATCATTTT 15805 30 100.0 35 .............................. TTGAAATAGTATCTTGAGAAATAAATAGAAGTTTC 15870 30 100.0 36 .............................. AAATATTCCTCAAATTCGTATGGAACTAACAGAATT 15936 30 100.0 37 .............................. AGAGAATAATCTATTTAACACTATAGAAAGAGAAAAT 16003 30 100.0 35 .............................. CTTGCTTTAGATAGGTTTTAAACTATGCACGAACT 16068 30 100.0 35 .............................. TAGAATAGAAGATTTAGAAAAGAAAGAAGGAATGT 16133 30 100.0 36 .............................. GGAGGAGATAATAATGAATAAAGATGGAAGTTTTAA 16199 30 100.0 36 .............................. CTAAATTTTTTAATGGGTTATCTATAGGGCAAAAGA 16265 30 100.0 36 .............................. TCATCTAACCAAGGGGGATTATTAGAATACATATTA 16331 30 100.0 36 .............................. ATAGGTACAGTAAAGGGAGATGGATATTTCCCAAGT 16397 30 100.0 36 .............................. GGATATATCAAAATTAAAAAAGAAGCAGATAAAATT 16463 30 100.0 36 .............................. GATGAAGATATTTGGGAATACATTTATAAATACAAC 16529 30 100.0 36 .............................. TGGAACAAGTTATCCAGATGAATATATTCCATATTC 16595 30 100.0 35 .............................. TAAGGATATAATCAAAAATAGAATTAGATTTATAT 16660 30 100.0 37 .............................. AAGTTATATAAGTGATTTAGAAAATGAGAGAGAAACA 16727 30 100.0 34 .............................. TGGCACTAGCTAAATCTTTAGCGTTATTAGCTAA 16791 30 100.0 36 .............................. TTATTTTTTTCGTATATTAAATATGCTGTAAATCCA 16857 30 100.0 35 .............................. AAGAAATGTATTCTATACACTTCACCATACTTGAC 16922 30 100.0 36 .............................. ACTCTCCTAAAAATCAAAATCTCTTTGTTGTTGCTC 16988 30 100.0 37 .............................. ACTGTTGAATAGGCAAAGTACCTTCAGCCATTTGCTT 17055 30 100.0 36 .............................. AGGATATTTTTATATTTTGGATTTAATTCAGCTAAG 17121 30 100.0 34 .............................. TATTCTAAATATGTAGTTGTAGGTTTCTTTGCAT 17185 30 100.0 37 .............................. AAAATATGGAATTCAAACAAATTCTATTCCAATAAAA 17252 30 100.0 36 .............................. TTACATATCATATGGCCATTCCTTTTATTTATCGCA 17318 30 100.0 36 .............................. TTTACACCGCCTTCTAGAAATACTATATCAGCTTCA 17384 30 100.0 35 .............................. GAGCTTGAAAATGATATTTTAACAACATTAAAAGA 17449 30 100.0 34 .............................. GCCATTAAGTATCATCCTCCTTGCAAAACTTTAA 17513 30 100.0 36 .............................. TTTTGTAGTGCAAAAAATGATTTATAAATATCTTAA 17579 30 100.0 35 .............................. GGTAGCTGCTATTAATAGAGATAAAGATATAATAG 17644 30 100.0 38 .............................. AGAGATTGAATACCAATCTGAGCTAAAGCCTTACGAGC 17712 30 100.0 37 .............................. ATAATGAGAACCCAATGTCAGATGATGAGTTAACCAT 17779 30 100.0 34 .............................. TGCCATGTATTTCTTAAAGAATCCATTTGATCCT 17843 30 100.0 36 .............................. GCCTATAGTTGCATACCCTCTTGAAAATGGTAAGTA 17909 30 100.0 38 .............................. AGCCATATTCTCTCTTCATCTTTATCCCATCCACCTAA 17977 30 100.0 35 .............................. AGAGTTCGATGATTTAATTAGAGAGTGTGAAGAAG 18042 30 100.0 35 .............................. ACTGGTGCTTTAAAACTACTTGTACCACTTATATC 18107 30 100.0 37 .............................. TAGTAGTAAAGTAAAACTAAATCCGTTTCTTTTTCAA 18174 30 100.0 35 .............................. AAATCAAGGTATGTTAATAACTCCTAAAGAAGTTG 18239 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ====================================== ================== 47 30 99.9 36 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : GTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTTAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAAGTTTGCGAAACTCTTGAAATAACTAAGTTTTAGGCTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTACAAGT # Right flank : TATTAATACTGAATTCACTAAAAATTAAGTATCTAATTTATATTATTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGTATAATATGAAAAAACTAGCTTTTATTATAAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAGTCTAATATTTTTATAAGGCTTATGAATCTTGGAATGGCTTTATTTTTAAGTTTTTGTCTTTTAGTATGGATGTATGGAGAAAACTTTAATATTATATTAAGATCATTTATAAGTATTTATGGAGTTCTATGTTTCATGTCTTTTTGGCCAGTTTCATATTTATTTGATGAAAAGGACAAGGTAAAAGGAAGTACATTTTACATATTTCAAAATATTTCAGTATTTTTCTCTATTATTATATTAGTTGTTTATATACTAAAGAATTACGATAGAGTTAAAAGCTATTAATATAATTAAAAGTAATATAATTTAAAAAATATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //