Array 1 165627-165048 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASR01000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain sg_wt6 wt6_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165626 29 100.0 32 ............................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 165565 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165504 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165443 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 165382 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 165321 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165260 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165199 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165138 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165077 29 96.6 0 A............................ | A [165050] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183740-181759 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASR01000029.1 Salmonella enterica subsp. enterica serovar Typhimurium strain sg_wt6 wt6_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183739 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 183678 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 183617 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 183556 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 183495 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 183434 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 183373 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 183312 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183251 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183190 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183129 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183068 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 183007 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 182946 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 182885 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 182824 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 182763 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 182702 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182641 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182580 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 182519 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 182458 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 182397 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 182336 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 182274 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 182213 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 182152 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182091 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182030 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 181969 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 181908 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 181847 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 181786 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //