Array 1 1775668-1776305 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHX01000011.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL03550 2015LSAL03550_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1775668 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1775729 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 1775790 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 1775851 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1775912 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1775973 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 1776034 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1776095 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1776156 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1776217 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1776278 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1792946-1794806 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHX01000011.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL03550 2015LSAL03550_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1792946 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1793007 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1793069 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1793130 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1793191 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1793252 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1793313 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1793374 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1793435 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1793496 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 1793557 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1793618 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 1793679 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1793740 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1793801 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1793862 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1793923 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1793984 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1794045 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1794106 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1794167 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1794228 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1794289 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1794350 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 1794411 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1794472 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1794533 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1794594 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1794655 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1794716 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1794777 29 93.1 0 A...........T................ | A [1794803] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //