Array 1 31-538 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXSZ01000133.1 Pseudomonas aeruginosa strain MRSN9718 MRSN9718_contig00133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31 28 100.0 32 ............................ GAAGAGCAGAGGCAGGAATGCCTAGCTCTAAA 91 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 151 28 100.0 32 ............................ TGGTGGCTGGCGATGTGATCCGATTGGCCAAT 211 28 100.0 32 ............................ AACAAGGTTTCTTCTGGCCAGGGGCTGTACCC 271 28 100.0 32 ............................ GAATGACGCAACCGAAGCGGCAGCAGCGGCTG 331 28 100.0 32 ............................ TTCGAACTCCTGCGCATGGAAGGCCTGCGCAC 391 28 100.0 32 ............................ TGAGTGCTCACGGGAGGCTGAGGCCGAAAAGC 451 28 100.0 32 ............................ TACAGCGTGATATCCAGATCATCAACGACACG 511 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CAGCCTCTGGCCGGAGGATCAGCAGGCGGAG # Right flank : TATGACCGGAGGCTGTCTTTGTCCGAGGTGGTGTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 55-1103 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXSZ01000134.1 Pseudomonas aeruginosa strain MRSN9718 MRSN9718_contig00134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55 28 100.0 32 ............................ TTGCGCAGGCGGTGCTGGGGCTCGCGAAGCTC 115 28 100.0 32 ............................ TTGCTCAGCGGGAGAGATTTCCCCGTTGGATA 175 28 100.0 32 ............................ AGGCTGCCAAGTCGGTGCGCGAGGCCGGCTTT 235 28 100.0 32 ............................ TCATAGGGCTGCGGCAGGTTGACCACGTCGCT 295 28 100.0 32 ............................ TTGAGGCGTGAGCGACTTCAGGAATGCGCTCT 355 28 100.0 32 ............................ ACGACGGCCGCCTTGCGGATCTCGGCAGCGGA 415 28 100.0 32 ............................ TCCTGGTCGTCCTGCGCTCGTACGGCCATGGC 475 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 535 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 595 28 100.0 32 ............................ TCTGGCGAAGAGCGGGATGACAAGGGCAGAGC 655 28 100.0 32 ............................ TTGCCCGTAGAAGTACGTTTCCTGTGCCATGT 715 28 100.0 33 ............................ GTCCTTGAACAGCTTCGCGGCGCGGGCGGTGTA 776 28 100.0 32 ............................ ATCTACTGCCGCACAACAGGCCAGCGCATCGG 836 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 896 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 956 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 1016 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 1076 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGCCGTATAGGCAGCTAAGAAAATTACCGTTGCCATCGCCGCCACCGTCGCCGCG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11326-9977 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXSZ01000134.1 Pseudomonas aeruginosa strain MRSN9718 MRSN9718_contig00134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11325 28 100.0 32 ............................ CCGCAAAAGGGGTGCATCCAATGGCCGTTGAA 11265 28 100.0 32 ............................ TTGTGCGCCCGTGGGCCCAGGACAACCAACAC 11205 28 100.0 32 ............................ TGGTCATTACCGACCTCAAAATGGGGAAGGGC 11145 28 100.0 32 ............................ GCGCTACCGGCTGCGGTACTGCTACTGCAACG 11085 28 100.0 32 ............................ ACAAAGAGCACGGCGAAGTCGCACGGCACACG 11025 28 100.0 32 ............................ GTACATGAGAGGCCGCAAGGCTATCCCAGGCC 10965 28 100.0 32 ............................ TGTCGGCCACTGAACAGGATCGTGATGTGATG 10905 28 100.0 32 ............................ TCAGAGACGGCCAGCTCAAGCCAAGCGCACGC 10845 28 100.0 32 ............................ GTCATACCGTTGAGGCGCGCCAGTTCGTCGAG 10785 28 100.0 32 ............................ AGAGCGCTGGGGGCAACTCGCGGTGGATCATC 10725 28 100.0 32 ............................ AGTCCGTACTTGATCTCGGCCCAGGCGGTATC 10665 28 100.0 32 ............................ TTGTCGCGGGGCGTCTCGCCGAGGCCGACCAC 10605 28 100.0 32 ............................ ACGCAACGACCGTCCGCCGTCGCGTCGCCGCC 10545 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 10485 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 10425 28 100.0 32 ............................ ATGTTGTTCCTGGCCTCGGCGATCTTCTGGTC 10365 28 100.0 32 ............................ AGTTCTTCGTCAAGCACGTAGGGCGACTCGGG 10305 28 100.0 32 ............................ ATCACCGCCTTGACGCCGACGAAGGCAACAGC 10245 28 100.0 32 ............................ GTCGCGACAAGACCGAACCCGACAGAGAACGC 10185 28 100.0 32 ............................ ATGACTATCTCGTCGCTTGAGATTTGCAGCCC 10125 28 96.4 33 ....C....................... TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 10064 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 10004 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGTCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //