Array 1 222175-219445 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRF01000001.1 Acinetobacter baumannii strain DE0058 NODE_1_length_891541_cov_26.955483, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 222174 29 96.6 32 ............................C TTACAAGCCATGCCCGTATAGTGTGTAGGCAA 222113 29 96.6 31 ............................T GAGCAGTTCTATGTTATCTGGCTTTCTACTG 222053 29 96.6 31 ............................T CCTATGGTTATCAGATTTAACCTACTGGAAG 221993 29 100.0 31 ............................. GAAGATAAGTGGCCACGCTGGAATGGCATCC 221933 29 100.0 31 ............................. CCGCTGGTTGAGCATGTTCCATTTGTAGGAA 221873 29 96.6 31 ............................G TACACAGATTTATCACAATCTATGGCCTATC 221813 29 100.0 31 ............................. GTACGTTTTGTGTGGTCAGGACGGTCTGTAT 221753 29 100.0 31 ............................. TAATAAATATATGACTATTGCAAGACCCAGA 221693 29 96.6 31 ............................T TTTACGCGCATTCTGTTGCTGCGGTTCGCAA 221633 29 96.6 31 ............................C TTGGCTGGTATCGAAAATAAAACTGCAAATG 221573 29 100.0 31 ............................. GTGAACTGCATAGGTGTCATGTCGTAAGTGT 221513 29 96.6 31 ............................T GATTAACACCGTTTATAATCTTGTCAAGCTT 221453 29 100.0 31 ............................. ATTGGCGTTTGATGTTTTGTCAGTTGCTGGC 221393 29 100.0 31 ............................. ATCGAGCAGCGCGAACCGCAACGCCCTTTAT 221333 29 96.6 31 ............................C GACGAATAAAACGTAAGCGAACAATTTTAGT 221273 29 100.0 31 ............................. GAGTAATCTGTGATGATTAGATCCAGAACAT 221213 29 100.0 31 ............................. GAACGGTTGAAGACATAGGCTATTTTAAATT 221153 29 100.0 31 ............................. ACACCATTAGTTCCAGATGTAACAGGATTGA 221093 29 100.0 31 ............................. TCCGTTCGTGGTACCGGTGAGAAGCCATTAA 221033 29 89.7 31 ....G......TG................ TCTTGCTTGTGCAATCGCTCGTAACGTCTTG 220973 29 89.7 31 ....G......TG................ GTTTGCGCTAAGCAGATAACTGAGAAGCGTA 220913 29 89.7 31 ....G......TG................ GTAACGATCAGAAAAGCGGTCAACATGCCGA 220853 29 86.2 31 ....G......TG...............T GATTTGGACTGGATAAGTACGCCTTGGGGAT 220793 29 86.2 31 ....G......TG...............G TGTATTATCAGGCGGTTGCGGACAGTAAGTA 220733 29 89.7 31 ....G......TG................ ACAGCTTCACTGGTTGCATGAGCAGCATCAT 220673 29 86.2 31 ....G......TG...............C AGTGCGTGTTGAACAGGATTTAAAAGAAAAT 220613 29 86.2 31 ....G......TG...............T ATTGAGTGTGGAACTGCGGAAGAGTTAAAAA 220553 29 89.7 31 ....G......TG................ TACTGTTTCTGTACGTACTCCACCTCTAGTC 220493 29 86.2 31 ....G......TG...............T TAATCGCTAAAATTTCGCTTTTATATGCAGT 220433 29 86.2 31 ....G......TG...............G TTGCCGACCTGATTTAACTCTCTTTCCGTTC 220373 29 86.2 31 ....G......TG...............T TCCTTGATACCGTTGATGATCTTATCCAACT 220313 29 89.7 31 ....G......TG................ ATCACCATACCATTCGAAGTTAGGGCGACCA 220253 29 86.2 31 ....G......TG...............T CTTGATAGGTTCGATAGATATTTTCCAGATC 220193 29 96.6 31 ............................T AGTAAATGAACAATGGGCGAAACTTACTCAC 220133 29 96.6 31 ............................G TATGTTTTCTCGGGCCAATACTTACAAAGAC 220073 29 89.7 31 ...AC.......................T GAACTGTTCTGCCCACAGTTCCCACTTTTAG 220013 29 86.2 31 ...TG......TG................ GTAGTGGTACTGTTTTTGCTAAAGATAATAT 219953 29 86.2 31 ...GC.......G...............T TAAACATGCTCACCTCCAATTGCCTCGTAGT 219893 29 82.8 31 A...G......TG...............T TATTAGCCGTGTAGCACGTATCGAGTCGAAA 219833 29 93.1 31 ....G.......G................ GTGTGAAAAAGTTATGTTTAGAGCAGGCGGA 219773 29 93.1 31 ....C.......................T TCACTGTCGCTGGTATTTATGAATACGTTAC 219713 29 82.8 31 ..C.G......TG...............C AAACCTCAGAAACATCTATATTCGCAAGATA 219653 29 96.6 31 ....C........................ TAATTCCCACAATTTTCTCTATACTTACTTT 219593 29 89.7 31 ....G......TG................ AATAAAGGAAATCTAAAAAAGCAATTAACAT 219533 29 93.1 31 ....G........C............... TCACCACATTCCCGCAACCGCAATTAATAAA 219473 29 82.8 0 ....G.......TC.A........A.... | ========== ====== ====== ====== ============================= ================================ ================== 46 29 92.8 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGCCTTGAGTTTACGCGTGATGAAGGTAAAAACTCTCACGATACTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGTATTAGCTTCGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTCGCCGATCTGGTTAAAGATGCTTTTGTGATGCCAATCGCTTTTACATGTGCCGCAAAAGGATTAAATCAAAAAGAATTCCGGATGCAACTTATTGAAACCTGTCAAGATCAAGATATTTTGGATTACATGTTTAGCTTCATTACTGACATATGTAGCAAAATCAAATAAAATCATATAATTAAGACTTATACCTCATAACGAAGTATTTTCACTCATTAAAAACTCATATAATTGATTTTAAGAGTTTTGTATTAACTTAACTCTA # Right flank : TCAAGTCTTTAATGCCCTTGCTTCAGCAATATTATGCTGTTCAACCAAAGTACGAATGGTATATTCATGATTGGTTTTTTGGTCACAGGCAAATTCACATTTTTGATCCAACGGCAACGCACTACCCCCAAGCAATGGACATCCTGCAAACAGCTCCGCCACCCAGTCAACAAAAACCCGAACCTTATGCGATAAATGTCGACTTTGCAAATACACCACCGAAATCGGCATCGGTGCAGGTGTCCATTGAGGTAATACTTCTTTTAAAGTCCCCGCCTCAAAGTGATTGGTCAGCATATAACGTGGTCCTTGAATCAGGCCAAAGCCTTGCAGCGCCAAATCGATATAGGCATCGCCATCATTGACAGACACCTGCCCATTAACACTGACACTCTGGATCAGGTCATCGACCACAAAATCCCAGTCAAAATTACGTCCAGTACGGCTGGAGAAGAAATGAATGGCTTGATGATTTTTTTGTAAATCTTCAAGTGTTTTCG # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : GTTCGTCATCGTGTAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 227769-228336 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRF01000001.1 Acinetobacter baumannii strain DE0058 NODE_1_length_891541_cov_26.955483, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 227769 28 92.9 32 ...TG....................... GTAATCGGATCTAAACCAAAAAGTTTCCCCAC 227829 28 100.0 32 ............................ TCACCCCTCCGCATCCGCTTTTGCTTCTTCTG 227889 28 100.0 32 ............................ CTTTCGAGCATGAGGCGCCGGGATTTAAAGAG 227949 28 100.0 32 ............................ AATCTTCAAATGATGCGTATGTCATTGAAGCC 228009 28 100.0 32 ............................ CGCATCAACGATGATGTCATCCATAGCAGGAT 228069 28 100.0 32 ............................ TTTTGGATTTTTGCCCTGATTGTTTCCAGACC 228129 28 100.0 32 ............................ ATGTCCGACTTTGAGCCTGATTGAATCTGGCA 228189 28 100.0 32 ............................ CGAAATTGTTAACATGGATTTAGGTAAAGGAG 228249 28 100.0 32 ............................ AGCAATTGCCTGAGTGGTATGAACCACCAGTG 228309 28 85.7 0 ...TG......TG............... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : CTAAATCTACTCTATTTTGAGGATAGGGCATGAAAGAGCAACCTGTCGTTAGGTTATGAACTTCATAATCGCCATTTGCTTGAATATTTTGATTGATAATGAATTTAGACATAGCTCTTACTCCTCACAAATCATAAGGATTGAAGATAGATCTACGTTTCGCTGTATAGCAGGATGAGACAAAAGTTTGAAATGTTGTGCTATCATTTAGATAGTCCTCCGTAGTAATTGAACGCTGTGGAAATGGACAGGGCAGATATGAAGTTTTCGACGGCTAAGTATCTGCTTTTTTTATAACCATTTCTAAAAAAGCTAGCTTATTTTTATTGCTTTGTCAACAATTCTTATTGAGTTTTAATAAAAAAAATTTATAAAAAAACTATAAGTATTAAGGGCGAATTTTTATAACGGATTTAATCTTTTTTAGATTGTGCTAATATATATAAATTCACTATCGTAAAGATAGTTGAGAAATTAATACTTATAGAAATTTTATAAGT # Right flank : AACTCCATTTAATGTTTAAGGCGACATGTTTTGTCGTTAAAAACTGGTATTAAGCAGATTAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCACGTCATTCTGATCTCAGCTTGTGAAAAAAAAGCGCTAAAGAAAACTCGAGCGATCTTGGATAGCTATGCGATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACTATGGATGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACTCGACAAACAGCGGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTGGTATGGGTTGTGGGCGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCAGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //