Array 1 97642-96231 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIW01000013.1 Propionibacterium australiense strain NML98A078 NML98A078_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 97641 36 100.0 35 .................................... TGCGACGAAGTGCCCGGCCTGCTGCTGCCCGTCAC 97570 36 100.0 37 .................................... CCAGCTCAGATCAAACCCGCCGAAACCCCAGTACAAG 97497 36 100.0 37 .................................... ATCGCATGGATGGCAGCCCAGCACGGGTGGGCGCCCG 97424 36 100.0 37 .................................... CTTTCCCCCGCGAATCCATCGGCCAGGTGCCCCGGAA 97351 36 100.0 38 .................................... GCGCCCACATCTACGGCCACTGGGGCAACGCATCCCAA 97277 36 100.0 38 .................................... CGCGACGTCCTCGACCAGGGCGCCCCCCTGTGCGGCAT 97203 36 100.0 38 .................................... CTGTTGGTGATGAACTTCGCCCAGCTCCAATGGCTGAC 97129 36 100.0 35 .................................... AAGGAGGTTGAAGCACACGACGCGACCCTATACCG 97058 36 100.0 37 .................................... GTCGTGCCGTCAGGGACGGCGCGGACAAGGTGTGCAG 96985 36 100.0 35 .................................... GTGTTGCAAACGTCGGCTTCGGAGGACACCGACGT 96914 36 100.0 37 .................................... TTGACATCCGCGAGGCGATGGAGCGTATCCAGACGCT 96841 36 100.0 36 .................................... GATTCACCGTCCCTCCAACTCGTCGGAGATGTACAT 96769 36 100.0 35 .................................... GTGCTCGCGCAGCTGCGCGTAGCCACGATCAGGGA 96698 36 100.0 35 .................................... ACACGATCACCGGGCTCCTGACAAGCGCCGGAATG 96627 36 100.0 35 .................................... CTGACTTGCTGAGAATCTAGGCTACTGCGTGGTAG 96556 36 100.0 35 .................................... GCAGACGCCGAAACTTATCGCATCTCCTTCGACAT 96485 36 100.0 36 .................................... TGACCACATGCACCACCCCCCATTAGGATGCTGACC 96413 36 100.0 36 .................................... CCAACAGCGCCGAACCTGACCACATCCTCGCCCACC 96341 36 100.0 39 .................................... GTGGCGTCTGTGGGCCAGACATTGACGCCCAGCTGTCAC 96266 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 20 36 100.0 36 GCCTCAATGGAGCCCCACCTATTCAGGTGGGGAAAC # Left flank : GCACCAGACCCCCGAACAAACCTTCGGAGCATTCGCCTCGTACATCACCGGACGCACCTTCGACTACGACTTCGAACACCTCCCCAAACCCCAACCAGAAACCGATCTTGTTTCATGACGGCCATACATGTTCGATTCCGTACCGGATTATA # Right flank : GGCTGCCAGATTTTGTAGGGGCTGACAAGCGGCGATGCTTCGTGTTGCGAGTGCTCCTCCGTTCTTGTCAGGATCGTAAGGCGTCTCTATGGTCTTGTCAACATGAACATGGCTCTGACAAGGGTGCGAGCGCTCACGCGGGGCGGCGGCGGGACACCAGCTCTCGCACCGGCCCCCACGTCGACATCATCCTACATGGAGATGGCTTCTCGATGCGGTCCCATGGCCGTCACGCTCTCCTGAGCCGGGTCAACGGCAACTACTGCTTCTCTCCTCATCGAAGGAAACCAGTCCGCGGCGAGCACCACCTCTGGCGCCATGCACTGAACATGTCAATGGTTTCGTCGGGCGGTGGGGAGTATCGAGACGGTAGTGGACGGCAACTGTCCATCAGCGGGCTGTTGCTGATGTCATCGCCGCCTCGTCCGGGAATGTTTCATCGGTTCGCGAGTTCGTGTGGGATTCTCGGCGCTCTGGTCTAGGAAGGGCGCACCCGGATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGAGCCCCACCTATTCAGGTGGGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 36809-35542 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIW01000014.1 Propionibacterium australiense strain NML98A078 NML98A078_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 36808 36 100.0 36 .................................... ATGGGAGTTGGGTTCACCAATAGCGCGTTCCGGCAC 36736 36 100.0 37 .................................... TCCACGGTGAGCGCGACCGAACCGCTGGCCGTGGGCT 36663 36 100.0 36 .................................... CCCACGTCACCGGCTGGTCAACGCGGCGCCGATCCC 36591 36 100.0 39 .................................... CGTCCGCCACGGACAGATAAGCATAGGTAAGCACGCCGA 36516 36 100.0 35 .................................... AGTTTGACGGCGGCCCCGTCGGCGGTGGGTTTGGT 36445 36 100.0 35 .................................... CACCGTCTCAACATAGTCAAAGCCGCCCGCGTCAA 36374 36 100.0 37 .................................... CTAGGCGCTTTGACCCGCACGTTGCGTATGTGCCCGG 36301 36 100.0 37 .................................... CTAGGCGCTTTGACCCGCACGTTGCGTATGTGCCCGG 36228 36 100.0 37 .................................... TGGCGGTTGCAGTCGCGGTGTGCTGCCTGCAGGTTGG 36155 36 100.0 40 .................................... TAGAGACCAAACCCAACAAGCGCCTCGCCCAAATCCTCAT 36079 36 100.0 35 .................................... CTCAAGTTTGCTCAATTGCTCAACAGTTCTTCGAC 36008 36 100.0 35 .................................... GGTGATGTGGCGTAGAGCAACATTCGATCAACAGG 35937 36 100.0 36 .................................... TCGCGGATGGCGCGGCCGCCGAGGCTGGCGAGAGAT 35865 36 100.0 37 .................................... TGCTGGTAGAACTCGCGCATGATGGCCGGGCAGTCGG 35792 36 100.0 35 .................................... CTTCGCCCTCAGTGGCCGTTGCAAACGGCCCGTCC 35721 36 100.0 35 .................................... ACCCGGGCCCTCTGGAACGCACGGAACATCTCCCG 35650 36 100.0 37 .................................... CCCTCCATGGCCTCGGCGGAGAACTTGAGCGTGACCG 35577 36 88.9 0 ........................T...GC...A.. | ========== ====== ====== ====== ==================================== ======================================== ================== 18 36 99.4 36 ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Left flank : GGAGAGATCCCGGAATACCGTCCCTTCGTGACGAGGTGAGGACATGGCCAGACGACGCTACCTGATCGCCTACGACATAGCGAATCCGAAGAGGCTGAGGGCCGTTGTCAAGTTGATGGAGGACTTCGGTACCCGGCTGCAGTACTCAGTCTTCCTGTGTGATCTCAGGCGTGCTGAGCTCGCGGTCTGGCGTGCGGCCCTGGCGGACGTTGTCGAGTTGAAGGAGGACTCGGTGATCGTCATAGACTTAGGGGCAGTGGGTGTGACCCCGATCGAGGTCATCGGTCTGGCGAGGAACCTTCCCGGTCACGGCGCCGTCGTCGTGTGAGGCCTGCGAGAGCTCCTGCCCCGCCGGTGCCTCGCGTGACCGTTCGCAGCCTTGCCAGAGGCCTGTTAGCGTTGACAAGACCATAGCGAGGACCTACGATCTGGGTATGTTGGCGGGACCGCTCGCAGCCGGGTGCGTTTCTCCTAGTCAGATGCCAGGAAATCTGGTAGCT # Right flank : AGTGTTTGATGTCGTGTAATGATGGGTAGCCCTGTTCCCAGTGGCGGGCTGGTGGGGGTGTTGAGGTGCTTGCTGGCTTTACTTGAACTGCGCTACCGGTCAATGATTTACTTGGCTGGGCGACGAGTTATATAAGTTGCACGAGCCTGGAAGATGATGGTGGGTATAAAAATAGCGGGCTCAGCGCTGGTTAGTGCTGAGCCCGCTATCGCTTGATCTTCTGTTGTTATCGAGCGTTCTTTTTCTGCTTTTCGGGTGCCACTTGCGCGGTTTCTTGAATGCTCATTGCTCCAGGGGGCATGGTGAACAAATCGACCGGTGACAGGCCTCGGCCTTCTCTTGGTTTTCCTCTCTTGTCGGTCTGATTGTTATCTTTGTTCTCCTCGAGAGTCATGTAACGGGTTTTGGTGTTGTCTGTGTATCCAAAAGCAGCGCGCTGTAGGGCTTTGATTCGGAGAGAATGTAATGGGTCTTCTTCGTTTTGCAACGAGAAGTTCTTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.70,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 136-1333 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIW01000017.1 Propionibacterium australiense strain NML98A078 NML98A078_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 136 36 100.0 35 .................................... CCGGTGAGGGTGGGGGTGATTATGGTGCGGGCATG 207 36 100.0 36 .................................... GCGACGATCACCTCCACACCCCCTCGTGGGTGGCCT 279 36 100.0 36 .................................... TTGGTAGCTGAGACCAAGATCATCCCTCAAAGAGTC 351 36 100.0 37 .................................... TTGCTCGCAATGGTGTTGTTGACCAGCTCGTAGAGCC 424 36 100.0 37 .................................... TTCTTTCTTCTGGTTGTTGACGTCGTCGACGACCCAC 497 36 100.0 36 .................................... CCACGCGCTGATGCTCTCAGCAAGCGCCTCGCCCAG 569 36 100.0 37 .................................... GAGCACTCTGACCTGCTGTCCCGCGAGGGCTGGGCGC 642 36 100.0 37 .................................... CATCTTCCAGGACGTGTACGAGTGGGCCGGTGAAGAG 715 36 100.0 37 .................................... CCGGTGACGTGACTGCCCCGGACGCAAATGATGCATG 788 36 100.0 36 .................................... GTGGACAAGGTGAAGGAGTGCGGCACGGTCCCGGAT 860 36 100.0 36 .................................... ACAGCCGACACGGCGTGCACGCGACGCTCTTCTACC 932 36 100.0 36 .................................... ACAGCCGACACGGCGTGCACGCGACGCTCTTCTACC 1004 36 97.2 37 ........................T........... GAGGCGCTCCTCGGTGACATGTGAGCGTCCGTGCCGT 1077 36 100.0 34 .................................... GTTGACCGCGGCGGCTAAGACCGCGCAGTGGCGG 1147 36 100.0 42 .................................... TTCAGCTGTGTCACCACGGCTGTATACCGATCTGATGTACAG 1225 36 100.0 38 .................................... TTGCTGATCGCAACGTGCGTGTGCAGGTCGGGGTCACC 1299 35 94.4 0 ..........................-T........ | ========== ====== ====== ====== ==================================== ========================================== ================== 17 36 99.5 37 GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC # Left flank : GTGCGTTTCTTCCATCTGATCAGGACAGCGGTTTCTTCCGGGGTGACCTCGATCTGCATGTCTCAATCATATCCGAAACAAGACCCCGAATCCATCAAAAATACGATTTCGTTTCATGACGGCCATAGCACGACAG # Right flank : CGTGCAACTCACGGCCAAGAAGATCGAGAGCCCGGAGGGTTTCCCCTGGGTCTCCGTGACGCTGCGCCCATTGCGGACAGCGCCGTGGCTGATCTGGTCAGTGTCACTCCCCCCTGGGAGACGGTCATCGTGCCGATCACGCCGGAGTCTTCCAGCCTCCGGGCGGCAGCGCCACCTCGCAGAGTCACCACATACCATCCGCACCGTGCCGCCTGACCCCGGGGCGAGCACTCGCGTCAGGGCATCGAAGGCCAAGGATGAAGAGGGGCCGCGGAACGATCGTTCCGCGGCCCCTCTTCCGGTTCTGCTCAGCCCTGGTGGGCCTTGCGGGCCGACCAGGCCGAGGCGACCATGTCGTCCAGGCTGTTGCGCATCTTCCAGTCGATGTCGCGGGCCGCGAGTTCACCGCGGGCGACGATGCGGGCCGGGTCGCCGGGGCGCCGGGGCGCGATCTCCGGGGTGAAGTCGATGCCGGTGACGCGGGCGATGGCCTCCATGAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 50872-48905 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIW01000006.1 Propionibacterium australiense strain NML98A078 NML98A078_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================================================== ================== 50871 36 91.7 36 .......................C.........A.T GAGCATACTCCACCCATAATCATGGGCTTTGCCTAT 50799 36 75.0 158 A.............T.A..T.G.T....A.....CT AGCTGCAGGGCGGGTCCCAGCTGCTGGAAAATCGGATCTTAACGGAGCCTCACCTTTATGAAAGAGGATGCTAGCACGAGTTCTCAGCACCCGCAACCTTGCGTCCCCAATCTCAATAGGGCTCGATCGTCGGGTCATCGTGCACCATGCATACTACC 50605 36 97.2 36 T................................... TCTCATGGTGTCCGATCCGACCAACGTAAAGCCGCC 50533 36 100.0 36 .................................... GCCCGGCGACCCGCTGTCGCAGGCGTACGAGCTGTG 50461 36 100.0 36 .................................... CGAGATCGAGGTCATCGACGGGGACCGCCGCACCAA 50389 36 100.0 35 .................................... AGGGCACCCAGGCTGTTGTCCATGTCGTGCGACAC 50318 36 100.0 36 .................................... GAGGCGCCACGTCGCCAGACTCCACTTCTCAGCCGG 50246 36 100.0 35 .................................... GCTGGCAAGACCGGCAAGGGCAAGACGACCGTGCT 50175 36 97.2 36 ..........................T......... CCGCGCGACCCGCGAGGGCTGGCCGTCTACCTCGGG 50103 36 100.0 37 .................................... CCCGATGGTCATCGACAAGGCCGTCGACCCCTACCGC 50030 36 100.0 36 .................................... TCACCGAATTGTCCTGTGGACACGACAAAAGGAGGT 49958 36 100.0 36 .................................... CAGGGTCACGACATCATGTACATTCGGAACCCGTTC 49886 36 100.0 38 .................................... GAGGTCACCCCGGAGTTCACCGCTGACCTGGGCACCAA 49812 36 100.0 40 .................................... CGCCGGCGAGCAGGGCATGGACGCCGACCAGCTGCGAGCC 49736 36 100.0 38 .................................... TCCAGCCCGGCGTCGCGGGCCTCCTGCATCGTGAAGCT 49662 36 100.0 36 .................................... GAACACCGTGGTCGAGGCCGTCGCTGGCATCACCCA 49590 36 100.0 36 .................................... CGCCGTGACCAGGACGGGCGCCCCGTCCCAGAACAG 49518 36 100.0 39 .................................... CTGCGAGGACCAGGTGGCACCCAATTCACCTATCAAGGA 49443 36 100.0 36 .................................... AGGCGTTTCCACCGACAGCGCCCTCATGGTCTACCT 49371 36 100.0 34 .................................... ACGTGGCCCCTCCGTCTGTGACCAGCATCTCTCC 49301 36 100.0 35 .................................... CCGACGGTCCCGCCGGCGTCGATGGTGACTCATGG 49230 36 100.0 37 .................................... TCAAGCGCGCGAGGGACGCTTTGACGAACTTCGCCAC 49157 36 100.0 35 .................................... CGGGGTTCTCATTGAGAGACAATCAGCAAGGAGAG 49086 36 100.0 38 .................................... CTGGTCACCGACCAGATCCGCACGAAACTGCCCGAGCA 49012 36 100.0 36 .................................... CGCCCCGCCCCAGCCGCCGATACACTCGAACCACTG 48940 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================================================================================================== ================== 26 36 98.5 41 GCCTCAATGGAGCCCGGTCCTTAGGACCGGGAATAC # Left flank : GCTTCTGCGGTTCTGCGGGTTGAGTTTCAAGCTGCCGGACCCGTTCGACAAGCACCGCGACGAGCAGGCCATCACCCGGCGAATGGCCGTGGTGAAGGCCCAGGTCAATGACCTGTTGGGCGCTGGCTGTGAGGTGTATGCGGTCGACGAGGTGCGTTTGGAGCACGAGGCCGAGACCCGCCGCATGTGGCTGCCCAAGGGTCAGCGCACCAAGTTCTACCGTCTGCGCCGCTGCCTGGCCATCGTATCCGCGGCCACGCACCGGTACCGGCCCTGGTCACTGCTGCGTTTCACTTCCCGTGACACCACCGACACATCCCGACCAATCCGCCGAGCGATCTCCCGGAACGAACAGCCCTCATCGAGCCCCTTTGCGATCGCGGCCCGATCAACAACCGTCAACACCCGGCGCCCCGCACCAACACCCCCGGCAAGCACTGTTGTTACGACCCCATGGCACCACCCCCGAGCAGCCACCAGTTCCGCACCTGCCCCTGAAT # Right flank : AGCTCGCCAGTTACGAGGCTGCTGACTACCAGTGTTGCATACTTTTGCGAGCGCTGCCACTCGGCGCCTCGTTGGACAGCGGGAAGCACTGCATGAACTGGCCAGAAACCGGTCCTGGCTAGGGTGCGAGCACTGTCGAAGGGGCTGGTCGGTATCAGAGCGCTCGCTAGACAATCTGGGGCCCTCGTGTGGGAAGCAGCCTGCGGTGACCCACGAACGTGAACCGGTCTCCACTGGGGTCGCCCAAATCAACGATCACCACTGAGTCTACAGCCAAGTCCATGATATCCTCACTGTCCGCTTGTAAATGGATGAGTTCTGTCCTAGTTAAGTCGCAGACGAAAACGGAATACTGAAGACGTTCCCCGTTGGCCTCCATCAGCTTGCAGATTCGACGAAGTCGCGTCTGGTTACGAATGTCATAGGCTATCAGATATCTTCTCCTTCTCGTTTTCATCTGGTCATCATCGCCGTGTACTGGTCGAGTTCTCCGATCATGA # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGAGCCCGGTCCTTAGGACCGGGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.30,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //