Array 1 241911-241271 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTLI01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H154 isolate H154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 241910 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 241849 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241788 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241727 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241666 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241605 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241544 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241483 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241422 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241361 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241300 29 96.6 0 A............................ | A [241273] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260085-258043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTLI01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H154 isolate H154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260084 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 260023 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 259962 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 259901 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 259840 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 259779 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 259718 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 259657 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 259596 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 259535 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 259474 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 259413 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 259352 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 259291 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259230 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259169 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259108 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259047 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 258986 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 258925 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 258864 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 258803 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 258742 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 258681 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 258620 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 258558 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 258497 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 258436 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 258375 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 258314 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 258253 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258192 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258131 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258070 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //