Array 1 10959-10320 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSBF01000012.1 Lentilactobacillus parabuchneri strain FAM23279 FAM23279_scf_0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10958 29 96.6 32 ............................A GTTGAAAAAAGGTTGACCTATCAGCAATCGCT 10897 29 100.0 32 ............................. GGAATTTGCCAATAAGACCGGAATAGCTTTCC 10836 29 100.0 32 ............................. GACGCAATCAACTCGACACTGTCCGACAAGAA 10775 29 96.6 32 ............................T GGTAATTCGTTGGTATCATATCCCACGTTTTG 10714 29 100.0 32 ............................. TGTAAGTAGTGAATCGAAGTGCTACATAATCA 10653 29 100.0 32 ............................. GTGCCGACCACCTCGCCGTTGACTGTGACTTC 10592 29 93.1 32 ......................G.....T CTTGGACAATGACTTGATGCCTGCTTCCATAG 10531 29 100.0 32 ............................. TTGTGATTCAAAATTCTTCTTTTGCTGTCTGT 10470 29 96.6 32 ............................T AATAAATGGCAATCAGCGCAAGTTGGAAAGAT 10409 29 93.1 32 ............GG............... ATGAGCTACGACTTCAATGGTTACTACACAAA 10348 29 86.2 0 ..........T.G........A.G..... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.6 32 GTATTCCCCACGCATGTGGGGGTAATCCC # Left flank : GTCAAAGATAAAATCATCTCGATTGGTGCTGTCAAACAAGCTCGAACAGGTAATTATACTGACTTCTATCAGCTGGTGAAAGTTGATTCTGATATCCCGGAGAAGATCACTAAGCTGACAGGTATCACAAGTTATCAAGTGCAGACCGACGGAGTTAAATTAGAGAACGCATTGAATTCCCTGAAGGATTTTGTTGGTGATTTGCCAATCGTTGGCTATAATTTGCATTTTGATCAAGCATTTCTTTCCGCCGGGTTTCGAAAAATTCAGCAAACAGATTTAGAGAATCAGCTGATCGATTTAATGCCAATTGTCAAAAAGACCGACCAATTCCTGGATAACTATCGGTTAGAAACAGTATTGGAAAAGTATGGTGTTGCCAATGCTGCGCCACACAATTCATTATCTGATGCCAAAGCAACACTTGGACTAGCAAATAAACTAATGGAAAACGGCCATTTGGAAATTTAAGAATGCCGTCATATCAGGGATTGTTTAGT # Right flank : AGTGCGGGATGACTTTTTTGTCAGTGAGGAGTATTCCCTACATGTGTCGGGGCAGAAAAGAAGAAATGACCTTTTCTGATAAATGCTATAATAAACGGGAAAATAACTGGTTGGAGGCAGCACAATGGAATTATATGGTGGGAAGCATATTACAATCACCGCAAAAGCAGAACGAACAACGAAACGTGACCGAATTGAGTTCATTGCAGGTCTAATTTTGATAGTTGTTGCGATTATGGCGGTGAAAACATGGTAGCGTACACCGAAGCACGTAAGCGGGCAACAAAGAAATACAGGGAGAAGCATAAGGAACGTACTAACTACCTAAACAAGCGCACGATTGCCAAAACGTTCGTTACAAAATATGGAACCATTGAGGATGTAAAAGCGTTGCAAACAATGATTGATGAAAGATTGCAACAAGAAAATGAATAAGGCCACTGGTTACAGTGGGGTTCAGAAGCTTTTGTTAGGAGCAAAAACTGAGACGCCTTTTCCAA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTAATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 36651-36134 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSBF01000012.1 Lentilactobacillus parabuchneri strain FAM23279 FAM23279_scf_0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36650 29 86.2 32 TCCC......................... GAACCCCTCCACACTGCTAAAGACGAAAACGA 36589 29 100.0 32 ............................. AACAGAGATAAAAATATAGGAGCTAGGTTGCG 36528 29 100.0 32 ............................. TCTCCTTCACGCCATACCAAGTGTTTGGGTCT 36467 29 96.6 32 ............................T TTGATATGCTTTCAATTTAGAAGCGTTCGGCA 36406 29 96.6 32 ............................T CCGATCGATGCCGGCTTGAAGGAACTTGAAGA 36345 29 100.0 32 ............................. GACAACTAACGCAATATAAATCGGAATATCCT 36284 29 100.0 32 ............................. AGGTCAAATCGATTTCGGACACAGAGCTTAGA 36223 29 93.1 32 .....T.................G..... CAATAGCCGCCTTGGTATCCGCGAATGACTTT 36162 29 72.4 0 .....T...G...C......A..G..TTT | ========== ====== ====== ====== ============================= ================================ ================== 9 29 93.9 32 GTATTCCCCACGCATGTGGGGGTAATCCC # Left flank : GGCCAAATCGGCGGCTACTCTGGCGATGTTTGGTACCCACAGCCAGCACCAAAGGATCACCCATGGCGAACAATGCCAAACGAAGCGATGACCCCACATATGTCCGGAACCACATTGTCAGCCCAAGCTCGATACGCAGCCGGCACCCGTGAAATTCTCGAAGATTTCTTGGAGGACAAACCAATCCGTCCTGAGTACTTAATTGCTCAAGGTGGCAGTTTGGCCGGTACTGGTGCCAAGTCTTACACCGTTAAGAAGGGTGAGGAGACACCAGGTAGCGGCGAGGATGAGAAGTAGGAATTCTTAAAATGAAAAAATGCGGTCTGGGAGAAGTTCTTACGGACCGTATTTTTTGTGTTTGTGTAGTGGTATTTATGAATTCTTTTATAGTAAACTGTTAGTAGGATCGTTAGAAAAAAGGTAGACCAAAATAAAAACTAATGAAAAACGAGCATTTTCTAATTTGAGAATGGCTATGTATCAGGGTTTGTTTAGTGTAT # Right flank : GCCCTCATAAGCTGGTAGCAGGCTATTCGCGTAAAGATTCATTGCTGATCGACAAAAAATCGTGATCCTGGGGGAATTTACTTCTCCTTCGAATCACGATTTTTTGTAAGTATTGAGCTGGAGTTATCCTTCAGCGTCATGAATCGCATCGGCAATATTATCAGCCGAAAAATCATGGTTCATGTATGCGTCATTACTAACCGGTAAATGTTGTTCCAGTGTATCAAACAACTGATAGGAAACGGTGCCTTTGTCTAAATGAAATGCCAACACATGGCCGCCAAACTTATGATCATCTGATAAAAAGTGGTGGTGGAAACCCGCGACCGCAGCCCCGTCAAATAATTCCGGAGAATAGTAACTAATCATTGTTCCATTCACCTGATTACGGGTAAAGATGCTTTGGGTACGCGCGGTTTCGGCTAGTGTCTGAAAAGGTGGCACGGATTTCTTAACCGCCCGAGTTTTTATTCCGGAGAAAGTGCCAGTAATTTTGATGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTAATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //