Array 1 205511-207057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYL010000002.1 Listeria booriae strain FSL L7-0231 NODE_2_length_473863_cov_57.149587, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 205511 30 100.0 37 .............................. AATCTAAAGCTGTCAAAACATCTTTTGTTTGAAAAGT 205578 30 100.0 36 .............................. ATCTGGAACAGTTAAATCAAAATTAGTAGAAGGGGC 205644 30 100.0 34 .............................. AATTATATTCCTTTGGCTGTTTTTATAACTTCTA 205708 30 100.0 36 .............................. CCTTAATCGTTACAAAATACATCGAGGAACAAATGT 205774 30 100.0 36 .............................. ATCAGTTAAGACCTCATTAATTTTCTCCAAAGAAGC 205840 30 100.0 36 .............................. CAAACAACAGCTAAAATACCGTTACTTTTAGACCCT 205906 30 100.0 36 .............................. CCCGCAAAGGTATGAGTTACCTTTCTTTACAGAGTA 205972 30 100.0 36 .............................. TTGTATAAGTCCCAGCTAATAACCTCGTATTTTTTT 206038 30 100.0 34 .............................. ATGAGTAATCGTAATGTCATGGCAGAGTCTCCGT 206102 30 100.0 42 .............................. ATAAATATAGTATCATCGGGATTTGGAATTCGTTGGGGAACA 206174 30 100.0 36 .............................. CCATCACGAATGTATACGTCTGTGCGAAGGTCTTCC 206240 30 100.0 37 .............................. AACTAGAAGTAGAGTCTTTTCCTACGAATCGCCGAAG 206307 30 100.0 35 .............................. GTTGAGGAGGGCAAAGGATGAAATGGCGCGTAAGA 206372 30 100.0 36 .............................. AAACCAGCGTATTGTGTCCGTAATGCACCCATTTTA 206438 30 100.0 36 .............................. AGAAGAATGGCAAGAAAACACAAGCTGGCAACTAAA 206504 30 100.0 37 .............................. ACAGGCGAACGGGAAGCGTAAAGTATCGAAGCAGACG 206571 30 100.0 36 .............................. TTTAGAGTTGCTTTGAAATTCAACATAATAAATTCC 206637 30 100.0 36 .............................. ATCATTGCTCGACCGCCGGGAGAGGTCGTGTCTAGC 206703 30 100.0 35 .............................. AGAGCCACCGCGTCTAACGCGATAGGGGTACCATC 206768 30 96.7 35 .................A............ TAAATGTTCTTTAATTCCTCGAATAAAACAACGAT 206833 30 96.7 37 .................A............ GCGTTTCAGGGCTAAACGGGTTTTTAGAGGGAGAATT 206900 30 96.7 34 .................A............ CAATCCACATCATTATTTTGTTCTTGCTCTTTTA 206964 30 100.0 34 .............................. ATCTTTCCTTAGTTAGGATCGGTGCTGCCGTTCG 207028 30 83.3 0 .........C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ========================================== ================== 24 30 98.9 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCATGTGCAAAAATCGGTATTCGAAGGTGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAACAATGGGGGCATCGACAGATTTTTGTTATGCATTGGTACTAAAGGGTTTAAACCTGTTTTCGGAGTTTGGATTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTGAGCGTTGATGGGGTACCT # Right flank : TCAATCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCTGTCTACCAAGCAATGTTCGTAGCCAGTATACGCTACTTTCCAGCTCTCATAAAAAATCCTCACGATAATCTTTAACATATTGATCAAACGAAGTAGCCTCACGGTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCTGCCACCTCATAATATGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCAATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGTATGAATAAATCATCATGTTTCTGAAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 79620-78007 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYL010000013.1 Listeria booriae strain FSL L7-0231 NODE_13_length_105905_cov_55.076038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 79619 30 100.0 36 .............................. TTTTTTCTGAATGATTCTTGCAGCAGGTACCGAGGT 79553 30 100.0 36 .............................. ATTTAACTCGTCTTCGGTTATGATGAATGCCGATTC 79487 30 100.0 37 .............................. ACTAATGGCGCTCAGAAAAAAATTATTAAAGCCATAC 79420 30 100.0 36 .............................. AATTATAAGACACAGTTCACAACGGCAGAAGCTAAA 79354 30 100.0 36 .............................. ATTTCTAGTAACGGAAAGTAAATTTTGTGTATACAT 79288 30 100.0 36 .............................. AGTCACGAGTTAAATCGAAATCGTGATACGGCACCA 79222 30 100.0 36 .............................. TCTTCAATCGCAGGTCGTGCGTATGCTAACCTTCGC 79156 30 100.0 35 .............................. ACGTTCATCACTTCGTTACTCGTGCACGCATCACC 79091 30 100.0 34 .............................. GGAATTTGGTAAGTACGAGAACGATGAAGATGAA 79027 30 100.0 37 .............................. AAATCCGAAACTGGTGACCAAGTAGAACAGCGGCTAA 78960 30 100.0 36 .............................. GTTGATGAGGCATCTTCATCAATTACTATTAAAGGT 78894 30 100.0 35 .............................. TTCGTTGCGTCAACCGCGCCCCGCGCACCCATTGT 78829 30 100.0 34 .............................. CCAATTTCCCATATTGTTTTTGAAGTGCATCACT 78765 30 100.0 36 .............................. AATTTTAAGGTTTTCTGCAACTTCATAAGGGACAAC 78699 30 100.0 36 .............................. TTTTTTAGCTGTTGCGGGAATGTCTGCGTTCTTTGA 78633 30 100.0 36 .............................. ATGTGCGAAGAGTGTACACAGAAACATAATGGTATA 78567 30 100.0 37 .............................. CGTGGATAAAATTAATTAGTGAGTGAAGATTTTGTTT 78500 30 100.0 38 .............................. AAAAATGTACTGGCGCTTAAAGTAGGATTTATGTTTCC 78432 30 100.0 37 .............................. AGTCCATCACGCTTGATAATTTCATGAAAACAGTGTT 78365 30 100.0 36 .............................. AGGCTTTGCGCGGCATCCCCCATTGTTTGCTTGGTG 78299 30 100.0 37 .............................. TAATCCAAAAGGAAATTGACCGCCATGTGGCACCTTT 78232 30 96.7 36 ........T..................... GATACTAGCACACGTCACGGACGATTGGGAATTTTA 78166 30 100.0 35 .............................. ATGGCTGTGCCGATACCAGGAACAACCGATCCAAT 78101 30 100.0 35 .............................. GTGTATTCAATTGCCAAATTTTGTTCCTCCTAATT 78036 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTGGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGATGATAAGTGGTGTTTGGTAAGGTGGGGACAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATATGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAGACAGATGCGGCATGAGCGGAGTTTGACAGATTGTCTTTATCTAAATAATATGAATCCAGACTAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGGTTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCCGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATTTGGCATGAGACACCGCAGGAATTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTATTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCCATTGCTATTGATATGACGACTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 151032-152101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYL010000009.1 Listeria booriae strain FSL L7-0231 NODE_9_length_201643_cov_63.028194, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 151032 30 100.0 36 .............................. AGAGGACTACCGGTGCTAGTTATTGAAGAAGATAAA 151098 30 100.0 34 .............................. TGGAAAAATGAAAATATTTGTTTTATGCGTTTAA 151162 30 100.0 37 .............................. ATAAGTAGTACAACGCCTACGATTACGGCTAGCGCGA 151229 30 100.0 35 .............................. TCTATTTTTATTGATTTTACACCTGTGCTTCTAAC 151294 30 100.0 37 .............................. AGGCGTGCGTATCGCATACAGCAAGAATTTAACTGGA 151361 30 100.0 36 .............................. TTATATCTTTCCTTTCTATAGCGTCCTATACATATC 151427 30 100.0 37 .............................. TCTAGTAAATCAGAAACAGGTGATTATTGGGTTCCTA 151494 30 100.0 37 .............................. CGTTTACGTAACGCGTCGATGTTAGCGGCAAAGTTTC 151561 30 100.0 36 .............................. TGTTAAAATGCGCCGCGTAAACAGGTCCGCTGATGT 151627 30 96.7 36 ....................A......... AAGTGCGCTGTCTTCAAATACACGTCGGGTGGTTAC 151693 30 96.7 36 ....................A......... GCGGCAAAGTGATTGAGTATCGGTACTACACCTGTA 151759 30 96.7 23 ....................A......... CAAGTCCGGTCGTGTATCAATTT Deletion [151812] 151812 30 83.3 35 TC....C..GT................... TTGGGATGAACATCGTTTGGCAGAAGAGTTACAAC 151877 30 100.0 35 .............................. TGCGATGTGTTGCAACAGTTGCACACGCTCTGGTA 151942 30 100.0 34 .............................. AACTTCGAAAAGTGGGCCAATACAATTCGATTAA 152006 30 100.0 36 .............................. TTGGTTGGCACAAAATCAAGTGCTTGTCCGAAAAGG 152072 30 83.3 0 .................A..C...A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 97.5 35 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAGTCAATATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCATACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTTGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCATAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGGAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGATTACGGAAATGCATACCCAATAAACTACGGATTCGTTCCGGGAGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGTATTTGAGGGAATACTCGTCGCGGTCATACGCCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACAGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //