Array 1 384828-384677 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDX01000002.1 Streptomyces radicis strain AZ1-7 contig0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 384827 29 100.0 32 ............................. TCATGGGCGACGGCGAGACCGGGTGCCCAGTC 384766 29 100.0 32 ............................. GGCATTGGCCGCCACAACGTCCTCGGCGAGAA 384705 29 89.7 0 .C...................A..A.... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTGCTCCCCGCAGGCGCGGGGGTGGTCCC # Left flank : TCCACAGATGGGTGTCCGTGCCGCACACCTCGCTGCCGAGGGTCCGCAACAGGATCGCGCCGGGCTCGAGCTCGGGCCACGAGAACTCCCGCCGCTCCAGTGGCGCCTCGGGCCCGGGCATGACGACCGCGGATATCACCGGGGATTCCTGTCTGTTGACGTCTGCTGTGACGTCCTCATCGTAGAACCCGAGGTGACGGAGGGGCTGTTCGCAGTTCCCCGGCGCGCACTCGGGAGTACCGTGTCGAGGTCGATGGCGGGCCAGCCCGCGCAGCGCAACCGGTGGCCGCTGCCCACCGTCGCGGCCCTGGCCCGTGCCGCGGGCGCCGCATCGGGTCTGGCCGCCCATCCGCTGAACCGCCCCCGTCCACGGCGCTCCCCCGGGGGCGCGGTGAACGGGCGCTTTCTGCGTTCTCCCGCACGGCCCAAGGCCCCGCTCGCTAGCATCCGTAGTGATGCATTCCGCGCCTTGCCCCAGGAATCCGGGCAGGTCAGGAAGC # Right flank : GCACAGCGCTCCACCGGTGCGACACCCCGGTGGCGAGAGGCCGCCGCCGCGTGACGGCGGCGGACGTTCAACGCCCCCGCGCGCGAGCCGGGTCGCGGGCGGGGGCGCTTCGTCATGACCTCTGTGTGCGCCGTGCTGCGCCGACAGGCCACACGACATCAACGGGCAGCCCCGCCTCACGCGCCTCGATGACCACGTCAGCCGTACCACCGCCCTTGCCGCTCGGCGGCGACCCATCCCACACCGCGACGAGGCGGTCGGCGCGGCGCAGCAGTTCCTTGTTCGCGGCTTCGTAGGCGGCGCGATTCGCGGTCTCGTGGGGCACGGTGTGGACCTCCACCGCGGCCTCCACCAATCTGTCGAAGGTCTCCGCGTGCTCTGGCTTCACCTTCTCGCCACGGTAGTCACGCGAGGGGATGATCACCACCAAGCGCCCGCCCGCGCTCAGGATGGCCTCGGCGAACAGGGCGTCGGCGCCAGCGGCGATACAGGAGACCCCC # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9242-8972 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDX01000026.1 Streptomyces radicis strain AZ1-7 contig0026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9241 28 100.0 33 ............................ TGGCGACGCCCCCCGCCCGTGACCAGGGGCGGG 9180 28 100.0 33 ............................ CCACTACAACGAGGTATGGGGAGACCGAGAGTC 9119 28 100.0 33 ............................ TCAGATCGGGTGGGAAGATGTCCCGCTTGACGA 9058 28 92.9 33 ..............C..A.......... CGGGGCGCTTCATCTCCTGGAGCGGTACCGGCT 8997 26 89.3 0 ....................--.....G | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 GTCGCCCCCGCACCTGCGGGGATGTTCC # Left flank : GGTGGCCATCGCCTCGGCGAGAGTCCTGCGGGTCGATGCGGGGGAGTCCGGCCACTTCATCTCGATGTAGTTCCGGGCGTGCTCGTACCAGCTCACCTCCCCCTGCTTGCGGAGCTCTGAGAGTGGCAGTCCGGTCGCCTCATCGAAGGCTTCCCCGCGTTGGACGGCGACCATGAGCTGAGCCCGGCGGTTGTCGGCCAGCGTCTTCGTGCGAAATGTCGCTGAGTGGGGCGTGGTCCCAACTTTCCAGCGGACCTCCGCGGACTGTTGCTTCGTCCGCTGACGGACGCTCCAGATCTTGATGTCGAATGTGTGGGACAAAGAGATGTTCTCCCTCCGCGGTGGCGGCACCCGGAGCTACCGGAGGGCCGCTGAGATGTCGTCACACGGTTGTGTCGGCCAAGCCCTCCAGCCATTCGTCCAGGTCGGAGCGAAGGACCCGGATATGGCCGTTGGGCAGCTTGTGGAGCCGGGGCGCTTGTCCTCGGCTGCGCATGCGG # Right flank : CGCCGACTCCAGGGCGGCGTTGGTGAGGTGGGCGTCAGTTCTTCGGTGTCCGTGAGCGTGCCATGCGGGCGGCGAGGCGGCGGGGGGCGTGGTGGACGGCGGTCGCGTAGAGCTTGAAGTGCCGACCGGCGACGCTGCGCGGCCTCCTCCGCCGCAGGTCCTTCATGGCCTGGTCGACGACCTGGTCGACGGACAGCCAGATCCAGTCGGGGATGGTGTCGATGTGGGGAGCGCCGGTGTGGGTGAATCCCGGGCACACCGCGAGGACGCGGACGCCACGGGGGGCGAGGTCCAGGCGCAGGGACTCGCTGAAGTGGATGAGCCACGCCTTGGCCGCGCCATACGTTCCCGCGGGGAGAAGACCGGCGACGGAGGCGACGTTGAGGATCGCGCCATGGCCGCGTGCGGTCATGCCCGGGATGGCGGCGTGGGTGAGCCGCAGGGGGGCGCGGACGAGGAGGTCGAGCATGCGCTCCTCGTCGGCGAGCGCGCCGCGCGGG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCACCTGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 346521-345433 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDX01000003.1 Streptomyces radicis strain AZ1-7 contig0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 346520 29 100.0 36 ............................. CCGAGCTCGCCGACCTGATGCGCAGCCAGGCCACGG 346455 29 100.0 38 ............................. CTCCTGGCGGTGCGGGTGGTGGTGAGGTGCTGGATCGT 346388 29 100.0 37 ............................. CGCATCGCGACGAAATCCCACGACTCCTCGTCCCTGC 346322 29 100.0 37 ............................. GCGGAACCTCGGCCGGGGCCACCGAGGGCGTCGGCGT 346256 29 100.0 37 ............................. CGGCGCACCGTCGTCTCACCGCACCCCAGCCGGGCGG 346190 29 100.0 37 ............................. AGGGGTTCTGCCGCGGCTCCACCGACGTCCAGGCCAC 346124 29 100.0 37 ............................. GGATCCGCTGCGATCCCCGTGGGGGAAGGCTCTCGCC 346058 29 100.0 36 ............................. TCAGGCGGTGCGCGGCGTGGTGGAGGAGGGCCGCGA 345993 29 100.0 38 ............................. GCGCGGTCGACCAGGTGCAGCAGCGCGGGGGCGGTGGT 345926 29 100.0 40 ............................. GTCGTCCCGGCGCCCGTGCTGCCGGATTTGACGACACCTG 345857 29 100.0 37 ............................. CACGTCTCCCAGCTCCTCCCGTACCTCGGCCTCGGAG 345791 29 100.0 37 ............................. CCAGCAGGTTGCAGGAGTTCACGGCCCCGTTCTTCCC 345725 29 100.0 38 ............................. TCGGTGGCGCCCTTGACCTGCGCGCAGTAGTCCGACGT 345658 29 100.0 35 ............................. GCAGGCCGAGTGGCTCCTGACGTCCCCCGCCCGGG 345594 29 96.6 39 ...................A......... GGATGCCCATCGCCCTGGTCGGGCGCCGCCAGAAAGGGA 345526 29 100.0 37 ............................. TTGGCCTGCCGCCCGGACGTTGGGCGTGTCACCATGC 345460 28 82.8 0 ....................-.CA...GA | ========== ====== ====== ====== ============================= ======================================== ================== 17 29 98.8 37 GTCCTCATCAACCCCGGAGGGTTCGCAAC # Left flank : CTTGAACTGCGGACTCGTCAGCCCCAGGGGCCTCAACCCATGCCCGCGCCACCCCTCATCGTGCAACGACCGTGCCAGACCGGCGTCCTGGCTCCCCAGCAGCCCATACACAACGGCCCGCGCCGGACCGTGCACGTCCTCCCACCGCAGGCTCGGCACATCGGCCGCCACGTCGACCCTGACTCGCATACCACCCCAACTATCCCGAAACGCACTTTCACGCCGCCGAGGAAGGTGACGGCATGCATTCAGACGGTAGCCGAACCATCTGCGAGGCTGAACTTATAGACTCAAATAGCTTAAAAATGTGAGAATCTGTCGCAAAAAGCTCCTCGGCGACGAGGTGCCTCGACACGTAAGCTAACCGCCACCACTGACAACGCGCCCGCGCCAACACCCACCCGGCCTGACCTGCACAGATGCACAACCGCCTGACCGCTGCAAAAACACTCCCGAGGACCCCACGTCGGAACCCCCCGACCTGCGGCTTTACCCTCGGG # Right flank : TCCGAAAAAGTCCGACTTTCACGCTTCGGTGGTTTCCCTCCACCAGCGCATGGTCGGTGCCCGAGTGCATCTGCCTTCGATGCACGACGTACGAGTACCCGAGGATTCCAGCCAAGAAGATCACCCATCTGGACGGCCGAGCCTCCCAAGGCTCAGCGACGTCACCTCTAGGCTCTGGCCACAACAAGAAGGGAGCGAAAGGGTGGAAGAGAGTGTCGCACTTCTTCTCAGTGGGCTCATCGCAGGCGGAGCGCTAGGCGCCCTGATCACCGGTTTTTACCCCCCTCGAAGCAGCCTGCCGTTCCTTCGACAGCCAAGGTGCGGGAAGGAGAAGATCACAATCTGTAGTGCTTGCGCGCACACCTGCGTCCACGCCCCTGATTGGCACCCAGGTTGCTCCTAAGGCCCAAAGCAGCGCTCTCCGCCTCGCGTAGTCGCACCTCCGGTATACCGATTCATGAGGGCACTGCCCTTGCACGCTGGCTCGACCCGCCAAAACC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCAACCCCGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 354976-356860 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDX01000003.1 Streptomyces radicis strain AZ1-7 contig0003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 354976 29 100.0 37 ............................. CTAGCTCATCAGGTGGGTGCCGTCGGGGAGTTGGCGC 355042 29 100.0 38 ............................. CCGCACTGCCGGGTCAGGTCAGCCACCACGATCCACTG 355109 29 100.0 37 ............................. GCGGAGGCCCGACGAGCCCTGAAACGGCGGCTGTCGA 355175 29 100.0 37 ............................. AGGAACGCGCCCACCACGACCGGGCGTACGACAACGC 355241 29 100.0 36 ............................. ACGCTCATGGCGGCGGACAGCAGCACATAGGGGCGT 355306 29 100.0 35 ............................. GCGCCCGTCCAGTCGGCGGGCACCCGGACCTTGAG 355370 29 100.0 37 ............................. GGGCACCGGTCCGGGCCGCAATCGCGGCCTGGGACAG 355436 29 100.0 36 ............................. TGCGGCGCTATGGCACCGGACGGATGGGGGTGATCA 355501 29 100.0 37 ............................. CCAGGCAGCTCGTGGACCTCCGCGCCCGTGTCTCCTA 355567 29 100.0 40 ............................. CTCGATTTCGGCCGTGCGCGCTCTGCTGGGGGATGAGCAG 355636 29 100.0 38 ............................. CCGAAGTCGGGAAGACCGTACTCCCGGCACACCACCAC 355703 29 100.0 37 ............................. GCCAGCGCGGGGGCGCCGGCGACGTCCTCGTCGCGGA 355769 29 100.0 37 ............................. TCGAGCATCCTGGTCAGCCGGTCCAGGACGGCCCGGC 355835 29 100.0 38 ............................. CGGTACTGGCAGAAGACGAGGGTGTGCTGCCCGGCCAC 355902 29 96.6 38 ..............G.............. GGCAGATCCGTCAGCGCGTGAACCTCAATCCCATAGGG 355969 29 100.0 37 ............................. ACGGTTTCGACAGCGCCAGGGTCCAGGACGGCCCGGC 356035 29 100.0 35 ............................. ACCCGCAGTGCCACCTCACCCAGCAGCTCGGCCAC 356099 29 100.0 34 ............................. CACCGAACGGTCTCCTGCACGTGGACGTCGGCCA 356162 29 100.0 37 ............................. AGCACCTTTCCCATGGCCTCCACCAGCTGCGGTCGGG 356228 29 100.0 37 ............................. TGGGTGAGGGAGGAGATGTTCCTGGGGGACACCTGCG 356294 29 100.0 35 ............................. CAGGAACTGCGGCGTCACGCCCTCCGGAGTGAGCG 356358 29 100.0 35 ............................. GCGAACCAGCGGACCGCAAAGTCCGCAGTACCGCT 356422 29 100.0 38 ............................. CAGTGTGGTGCCTGCCGTACGCCGCGGGCTACGACCGC 356489 29 100.0 36 ............................. GTTGTATCCGGGGGCTTGCCGACGCTGGGTAAGGAC 356554 29 100.0 0 ............................. - Deletion [356583] 356583 29 82.8 16 .........C....C.C.....G...C.. GCGGGGCCGACATCAG A,GC,T [356595,356603,356610] Deletion [356628] 356632 29 100.0 38 ............................. GGCACCAGCAGGTACGGCGACGGGCCGCGCATCCACAC 356699 29 100.0 38 ............................. ATCGGCGGCGCGATCTGCCGCAGAACCACGGTCCACAG 356766 29 100.0 37 ............................. CGGACGTGGGCCCAGTCAATTGCACCCGAGACGCCGT 356832 29 89.7 0 .........C...........T......T | ========== ====== ====== ====== ============================= ======================================== ================== 30 29 99.0 35 GCCGTCATCAGCCCTGGAGGGCTCGCAAC # Left flank : GTCCACCACCGCTCGCTCAAACGGAAGGTCAGCTACGAGGAGATCATCCACCTCGAAGCCCTCAAGCTCGTCCGCCTCTGCCTCGAAGGCACCCCCTACAAGCCGTTCCGCCCCTGGTGGTGATCCACATCTTCGTCATCCTGGTCTACGACACCGCCGTGGAACGCAACCCGAAGGTCCTCAAGACCTGCCGCAAGTACCTCCATTGGACCCAGCGCAGCCACTTCCAGGGCGAACTCTCCACCGCCCAGTACCGTGCCCTGATGGCCGCACTCGACGGCGTGATCGACCCCGAGCACGACAGCATCGTCGCCTACACCACCCGCTCCCCGGACCTCGTCGAATCCACGACCCTCGGCCTCCCCCTCGGCGGCCCCGGCGAAATCCTCTGACGAGCAGCACCCCATCTGACCTGCACCGATGCACTACCGCCGACTCGCTGCAAAATCCGGCCCGGACCACCGCCCAGGACACCTCCTGACCAGCGGTTTTACCCTCGG # Right flank : TCGCTGTTTCCACAAGGACTTGGGGACCGGAACACGAGGCCGTCGGGTCACGTGAGTTGGAGTCGAACGGGTTGAGTCACGTGTGATCTGGCCGGAGGTCTTTTCATGTCGATCGATCCGGTGGTCTTGCTTTGAAAGGACCATGCGCCCGGCGTGTCGATACTGGTGGGGTGCCCGTGTGCCGCGCGCAGTTGGGGCCGACTGTATATCGGTACAGGAACGTATCCCGATCCACCCCACAGCGTGCCCAGCCCCCGTACCTCGGTGTCCTGTATCGCTGTTGTCTCTCCCGCTGCCTGTTCCTTCCGTCTTTCTCCTTTCTCTTTTCAAGCCCAATTTGGGTTCTTCCTCTCTCCTGGGGTGAGGCGCGCCTCGGTGGCCTCCTGCTGGGGCGAAGGGCTGCCTCCTCGCCCGCACCCTCATGGCCGAGCCCGCACCCGCCGCCTGCCGCCTCCGGGGCACCTGCCCCCGGGGGCGCGCCCATGACAGCATGTCAGTGC # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCATCAGCCCTGGAGGGCTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 169-562 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDX01000030.1 Streptomyces radicis strain AZ1-7 contig0030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 169 29 100.0 32 ............................. CTGCAGGCGGACGGGCGCACGGACCCGGCGTC 230 29 96.6 31 ............................C GCGAGAGGGGCGCACACGGCGCGTCGCGCGC 290 29 100.0 32 ............................. TCGCCGAACCAGCGAGCCGCGGCGGGCTGCTG 351 29 100.0 32 ............................. AGCCGCTCCTCGTCCTCGTCGGCGGACCAGTA 412 29 96.6 32 ..........T.................. CCGCTGGGCAGGCCACCATCCGCACGGACGTC 473 29 96.6 32 ........................G.... GCCGGTGGCACATCACCGGCGTTGGGGACCGG 534 29 82.8 0 ..GC...................CG.T.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTTTTCCCCGCGCGAGCGGGGGTGCTCCG # Left flank : CAACAGGATGAAGGCATGGCGGGGCATCGCAACCCGCTACGACAAGACCCCGGACAGCTACCTCGCCGGCCTCTACCTTCGCGCCTCGATGATCTGGATCAAGGACCTCACACGAGCCACCCCTTGATCACAACTAAATACGCTCCCTAAGGCTCCTGTTGGCTGGGGG # Right flank : GCTGCGGCGGGGGGACGAGATGGTGGCGGTCGGGTGCTCCCCGCGTCAGCGGGCCCGCGCGTCAGGCCGCTCAGCGGTCGGAGTGACGTCTCAGGTGTGGGATATCCTCCCGGATATGGGAAGCACGGCGGATGGGCGGGACGCACGGAGCGGCCCCGAGGACCTGGGCGAGGGGATCGAGGCGAGGCTCGCCGGGCGGCTCGCCCAGCTGCGGGGTGAATTCGGGTGGTCCCTCGACGAGTTGGCGGGGCGGACGGGCGTCAGCCGTTCCACCCTGTCGCGGCTGGAGAGGGGCGAGATGAGCCCCACCGCCGCGCTGCTGGGGCGGCTCTGCGGCGCGTACGGGCGGACGATGTCGCGGCTGCTCGCCGAGATCGAGGCCCACCCGCCGCAGCACGTGCCCGCGGCACGGCAGGCGGTGTGGCGCGACGAGACATCGGGGTTCGTGCGCCGCTCGGTGTCCGCCCCGCACCCCGGGCTGCGCGGCGAGATCGTCGAGG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCGAGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4090-4604 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDX01000030.1 Streptomyces radicis strain AZ1-7 contig0030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4090 29 100.0 32 ............................. GTTCCCGTGCTGGGGCTGCTGCCGTGGGACGA 4151 29 100.0 32 ............................. GTCCAGCCGATGGAGGCCGTCGATCCTGGGGT 4212 29 100.0 32 ............................. TAGGTCGTTCATGTGGGCGACCAGGTCGTCGA 4273 29 100.0 32 ............................. ACCCGCAACATCGCGGCGGCCGGGATGGACCT 4334 29 100.0 32 ............................. TCGTCCTACTCCGACCATCAGTGCGTGGGCGT 4395 28 96.6 32 .....................-....... GTCAACTTGTCCGCGCTGCGCGTCGCCCCGGA 4455 29 100.0 32 ............................. AGGGGCGTGTACGTGTCGGACGCCAGCTGGAT 4516 29 100.0 32 ............................. GCCGAGCGTGTCGAGCTGCCACAGGACTTGGC 4577 28 89.7 0 ................T......-...A. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GACGAGATAGCGGAACGTCTCCCGCAACGGCGCCGGGTCGGAGCTGTCGGCGTCGAAGAGGTACTGGGTGTCCGGCAGCACGGCGAGGGCGAAGCGGGGGCTGTCGCCGTCGAACCGCCCGCCGCGGCCTGGGCGTTGGGCCGGGGTGGCCGCCGCGGCGGTGGAGGCGGCCGCCGCGGTGATCGCGGCACCGGCCGCGGGAACGGTGACCGCGGCCTGAAGCAGCCTGCGTCTCCGCACTCCTTCGCCGTCATGGGTATGCGCCATGGAAGAGCTCCTTGCACTGGTCGCGCATGTCAGCGGCAGTGTGCGGAGCCCTCATGGCCACTCGATGGCAACGGCCTGAACCCCCGGCCACGGCCCTCCGCCGGGCGGGGAACGGCGAGATCGGACGCGAGTTGAGGTGACGCGGTGCGAGGGGTGGACAATGGGCCGCGTGCAGGGGCCCGGCAGAAGGTCACGAAACGGCAAAGCGTCGCTGATGCCCCAGCTCAAGAGGT # Right flank : GGGGCTGCCCGCGTGGGTCAGGGCGTTCGATGCCAGGGTGCGGGCCGTGGTGATCGGGTCGGGGGTGGTGGCCAGGGCGTAGAGGACGGTGGCGCCCTCGTGGAGCAGGACCAGCTCGTCGCCCAGGCGGCGGGCGGCCTCCGCGGGCAGGCCCGCGGCGCGGCACTGTTCGGCGAAGCGGGCGCGCAGCCACCGTTTCTGGTCGGCGATCACGGCACGGCCGGGGTGGTCGGGGTCGGGCAGCTCGGCGGCGGCGTTGACGAACCCGCAGCCGCGCGGGCTGTGGGCCGTCATCCAGGCGCCCAGCGCGTCGAACGTCTCGAGCACCCGCTCGCGCGGCGACCGGCCATCGGCGGCGGCGCGGTCGAGCCAGTCGGTCACCCAGGCGCGATAGCGGTGGTCGCGTTCGCCCAGGTACGCGACGATCAGGCGGTCCTTGGAGCCGAACCGCTCGTAGAGCGTCTTCTTGGTGACCCCGGCGTGGCGCGCGATGAGGTCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 208188-208582 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDX01000004.1 Streptomyces radicis strain AZ1-7 contig0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208188 29 100.0 32 ............................. TCGTCGGGCAGCTGGTTGTTGCTCAGCCGGTC 208249 29 100.0 32 ............................. ATGTTGAACTGGCCGCCGCGCTCGACCAGTTC 208310 29 100.0 32 ............................. ACGGCCCTTGAGCCCGACGAGCCGAGCATCGG 208371 29 100.0 32 ............................. CTCTACCGGGTCATCGAGCCGGAGACGTGGGC 208432 29 100.0 32 ............................. ACGGGGATGCGGACGCCGAGCGCCGTCCGGTT 208493 29 100.0 32 ............................. ACCATGTGGCGCAGCACGGTGGTCGCAGGCGC 208554 29 96.6 0 ..............A.............. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTCCTCTCCGCGCAGGCGGAGGTGTTCCG # Left flank : CACCGCGACTCGCTCGTCAGTCACGGCACTATCGATAGCAAGCGCCACTGACAGTGAGTCGTCCCGTGAACTTTTCCGGCCTTGTGCGGATAAGCGATGAGGAGCAACTTCCAGCCAGATGCGAACAAATCAGGATTCCCGGTCGAGCCCAGTGGACGGTGGTCCCGCGCTTGCCGCCACCTGCGTCGAGCCTCGTCAGGGGCGTCGACGGGGCTTGCGCGGAGCGGACCCCTCGGGTCACCTTCGAGACAGATCCAAGGCGAGCGCGGCATCCACCTCAGCCGTCCGAAAACGCCACGGCTACACACCCGTTGACATATAGGCCATGCGTGCGACGCAGCTACCTTCGGCAAGGACCGCCCCGCTCACCGGCACCCTCGATCCACTGCCCCGCACGCACGCCTAGACTCCCAAGCATGACAGCTGGACCCCACCACGAGCAGCGCCGCAACAACGGCAAAGAAACGGCAAAGCCCCTCTAACGCCGCAGGTCAGGAAGT # Right flank : GGCGGAATCACCGTCGCGGTCATCGAAACGCGCACCGCGCGCGACACACGCTCCCGCGCCCTGACCGTGCACCCGCGCACCATCGAGACGTTCGCCTCCCGCGGCGTGCACCACCCCTTCCTCAGCGAGGGCATGCCGCTGTCCGGCGGGCACTTCGGCATGCTCGATTCCCGGCTGAACTTCCGCCGCCTGCCCAGCCCCCGTCGACCACGCCCGACGCCCATCAACTGACCAGCCCCTCCACCACCTCGCCCGGCCCGGCCTGCGCGTGCGCACCGGCACCCCGCGCCTGCTCCCGGCCGACTGGTCCGGCATACGCGCCGCCCTCATCCGCCCCGACGGCCACGTCGCCTGGGCAAGCGCGGACAGCCACGACACCACGCTCGTCAACGACCTCACCGCCGTCCTCGCCACCACCCACCGGAAGCGACCCGGCGGCGCGTCCCCGGGTCGGGCCGTTGAGGCCGCTCGCCGAGTACCCGCGCGAAGAGCGCCTCCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCAGGCGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 219001-219641 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDX01000004.1 Streptomyces radicis strain AZ1-7 contig0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219001 29 100.0 32 ............................. CTGGTCGGCACCGTCGCGCCGCCCGCCCCGCT 219062 29 100.0 32 ............................. GGTCTCTGAGGAGGAACATGACGACGTCCATC 219123 29 100.0 32 ............................. CTGCTGTCCGGTACCGCGATTTCACCGCGGCA 219184 29 100.0 32 ............................. GTGCTCACGATCCCGACGGAGGGCGGCGAGAT 219245 29 100.0 32 ............................. TACTTCGCGCTCATTACGGGTGAGCGGGCGTT 219306 29 100.0 32 ............................. CCGCCGACGAACTGCCCACCGAGGACATCCTC 219367 29 100.0 32 ............................. ACCTCCTCGACACGTTCTCCGAGTACAGCACG 219428 29 100.0 32 ............................. GACGCCGTCAGCGACGCGATCGGCGAACGCGT 219489 29 100.0 32 ............................. TTCGCACGCGGATCAGACCATCCTCCGCAGCC 219550 29 100.0 32 ............................. TTCCTGGACGCGGTGACCGCCGAGTCGTTCGC 219611 29 89.7 0 ..............C.....C....G... | C,C [219635,219637] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CCGGCTCGTTCCTCAGCCGCGCCAGGACCGAGATCGGCCACGCCGAATACCTCTGCCGCACCCCACCCCTCCGCCTGATCATCCGCGTCCGCTCAGGCCACCACCACCTCGCCGGATGGCCCGGCGAAGGCCACGAACACGCCGCCCCCTGCCCGTTCCACAAGATCCACCCCACCGTCTCCGGCCGCGCCCAATCAAGCAAACCCACTGCCGCAACCAGGGCATCCCAGTGATCGAATGGGACACAACGCAACCGATGTCATACCTGACGCGACGTCCGTGAGCTTGTCGTTCAACGTCCAGACGTGATCGCAACCACGAATCGGCCCTTCGCCCATACGACCACGTCATGCGGCGAGGTAGCTTCGAGTCAGCACCTCCCCGGCGAGACATGGACCGAGCGGAAGGCAAGGCACATGTGCAACCCCAGACATGCCACAGCCCCGACCGCGACACATCACGAAATGGCAAAGCACCCGTAACGCCCCAGCTCAGGAGGT # Right flank : GACTCCAGGGCGGCGTTGGTGAGGTGGGCGTCAGTTCTTCGGTGTCCGCGAGCGTGCCATGCGGGCGGCGAGGCGGCGGGGGGCGTGGTGGACGGCGGTCGCGTAGAGCTTGAAGTGCCGACCGGCGACGCTGCGCGGCCTCCGCCGCCGTAGGTCCTTCATGGCCTGGTCGACGACCTGGTCGACGGACAGCCGGATCCAGTCGGGGATGGTGTCGATGTGGGGAGCGCCGGTGTGGGTGAATCCCGGGCGCACCGCGAGGGCGCGGACGCCGAGCGGTGCACGGCCATGAGCCGTCCGGAGCGAGATGCGCTTGCAGTGGGAGAACGGCGTCATGGATCTCGATGGTCTGCCGATGCCCCGCAACGCGAGAGACCCGCGCGGCCCGAGCAGCTGACGCAGCCGCGTGGGTCGCGGCGCGGCCAGCACGACCGTGGGAACGGCCGCGGACAGGTCCCGCCACAGGGGCCACAAGACCCGGACGAGACGAGCCTGTTGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44465-45231 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDX01000046.1 Streptomyces radicis strain AZ1-7 contig0046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 44465 29 100.0 32 ............................. TGGGTCGCTCCAGAGAAGAGCCGCATCACGCT 44526 29 100.0 32 ............................. ACGCTGACCTGGCGGGGAACTCCTACTGGGCC 44587 29 100.0 32 ............................. ATCGACACCTCGGCCTGCCCGTCACCCGGGGC 44648 29 100.0 32 ............................. ATCGACACCTCGGCCTGCCCGTCACCCGGGGC 44709 29 100.0 32 ............................. ATCGACACCTCGGCCTGCCCGTCACCCGGGGC 44770 29 100.0 32 ............................. ACGTGCCCGCCGCCTGTCATCCAGATGCTGGG 44831 29 96.6 32 ...T......................... CCGTTCCCGCCACCGATCCCCGGAGACTACTG 44892 29 96.6 32 ...................A......... CGGTTCATGAACCCGTCGAAGCCCCGCGAGTC 44953 29 100.0 38 ............................. TCGACGTCAAAACCGCAGCCGCGACCGACCTCGTGCGC 45020 29 100.0 32 ............................. GCCATCTGCGGCACGTGCCCCGCCGCCGCAGC 45081 29 93.1 32 ...T....................C.... GGCGGGCGGCTCAGTATCCCCCAGCCCCGCGC 45142 29 93.1 32 ...T....................C.... TGCTTCATCGAGGCGGCGTCCTGGGCGCTGGA 45203 29 93.1 0 ...T....................C.... | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 97.9 33 GTTCTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : ACGAGCTGCTGGCCGTCTACCCACCCACCGAGCTCGTCTGCGTTTCGTGCATCGCGGCGGGCGCGGACGCGCTGTTCGCCGAGGCGGTGTTGCAGCGCGGCGGGCGGCTGGTCGTGGTCGTCCCGTCGAGGGATTACCGGTGGAAGAAGGTGAAGCCGGAGCACGGCGCGACGTTCGACCGCCTCGTCGAGGCGGCCACGGAAGTGCACACGGTGCCGCGCGAGACGGCTGACCGCGAGGCGTACGAGGCCGCGAACAAGGTGTTGCTCGAACGCGCCGATCGCCTCGTCGCCGTGTGGAACGGCGCCCCGCCGAGCGGAAAGGGCGGCGGCACGGCGGATGTTGTGGTCGAGGCACGGGAGGCCGGGCTGCCGGTGGATGTGGTGTGGCCGAAGGGCGCGGCACGGCGGGAGCCAACCCACAACGGCGGCACGCCCCCGGCGTCCGTCGGCAACGATCACGGAATGGCAAAGCCTGGCTAACGCCCCAGCTCACGAGGT # Right flank : CCCGAGACGGCTAGGGAGCGTATCGAGTCGTGATCAATCTGCGGGATTCTCCCTCACGGTGGGGCCTGGACCGGTAGATCTTCTTGCGTGACGCGAGTGCAACTGACGGACGACGAGTGGGAGTTCATCGGGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : TCCCCGCGCGAGCGGGGGTGCTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20226-20437 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBDX01000009.1 Streptomyces radicis strain AZ1-7 contig0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20226 29 100.0 32 ............................. GCAGGTCATCGGAAATGTAGAGGCTGAATCGG 20287 29 100.0 32 ............................. CCCCCGATCGGGCGAGGGGCCCAACCGGGGGA 20348 29 100.0 32 ............................. ACCTGCTCGGCATGCAACGGTCAGGGGGCCCA 20409 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTCCTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : TCAAGTTCCAGGAAAACGAGAAGGCGTCGGTCGCGGCGTTCGAGCTGGTGCGCGAGAGGTTCACGCTGGGCGCCGTGCTTGATGCGCTGGAGCGCGTATACGCGAAGGTGCGCGGGGCGGGGACGACGGCGCGGCGTGACCGCGGGGTCAGCGACGCCTCGACGCTGAACTCCCGGACGGCGCTTCGCCGGTGGGCCCCGACGCGCCTCCCGGAGTGCGGCCAGCGCCGGGTGCTCGGTCGACAACTCGGCCGCGTTGAGGCGGAGATCGCGCGGACGCCGGTGCGCGCCTGTGGCGAACGTGACGCATCGTCGAGGTGAAGTGCCCGTAGGTGGTCAACGCCGACGCTCTCAGCACTTCGCGGCCCCCGGCCCACGCGAACTCCTCTATACTCCTCAGCCGTGTCAACGCTGAGTCCACCCGATCCCCCGGCCCACGCAGAGCCGCACCCGGCAGGTCACGAAACGGCAAAGCGCCGCTAGAACGCCAGGTCACGAGGT # Right flank : GATGAGCAGGATCGAGAACGGCCGCCTGACGATCCGACGCCTCGAACTCGAGGCGCTGCTCGGGCTCTGCGGCGTGACGGACGAGGCGACGGTGGCCGCGTTGACCGCCATGCCGCGGCAGGCCCGCCAGAAGAGCTGGTGGCATCAGTCCAGCCAGGACCTCGACCCGGACTTCGAGGAACGGCTCAACGTGGAGGACGGCGCGGCCAGGCTGCACTTCTTCCAGCCGCTCCTCGTGCACTGCCTCCTTCAGACCCCCGAATACGCCGAGGCGACCATGCGCAACGCCTGGCCTTCCGCATCACGGGAGGAGATCGGGACGTGGGTGTCCGAGTGGCTACGGGCGGACGCCCTTCCGTTCGCCGTCTGCCGCTGTGGCTTGTCTCGTCGGGGTGCGGGTCAGTGATGGCACCTACGGGAGGGGGGCGCCGGGTGACCGGCCGTCCCGGTAAACGGTCGGTCTCGTCGTTGGCCAGGACCGTTCGCCGAACGGGCGCAGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //