Array 1 128287-127586 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLXC01000017.1 Escherichia coli strain MOD1-EC6481 MOD1-EC6481_17_length_191942_cov_131.0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 128286 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 128225 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 128164 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 128103 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 128042 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 127981 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 127920 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 127859 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 127797 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 127736 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 127675 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 127614 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145479-143803 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLXC01000017.1 Escherichia coli strain MOD1-EC6481 MOD1-EC6481_17_length_191942_cov_131.0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145478 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 145417 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 145356 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 145295 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 145234 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 145173 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 145112 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 145051 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 144990 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 144929 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 144868 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 144807 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 144746 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 144685 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 144624 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 144563 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 144502 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 144441 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 144380 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 144319 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 144258 29 96.6 32 ....................A........ ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 144197 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 144136 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 144075 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 144014 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 143953 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 143892 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 143831 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //