Array 1 991106-993317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNHM010000001.1 Clostridium perfringens strain BSD2780120875b_170604_NULL NODE_1_length_2106138_cov_29.6542, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 991106 36 86.1 30 A...C.TA..A......................... ATGAAATTATATTTTGTCTATAACATATCA A,A [991108,991118] 991174 36 100.0 30 .................................... GCTAGAAAAGTAGCTGATAGTAAAAGAGTT 991240 36 100.0 30 .................................... TGAGCTTAACCAATAGCTCCATCTGCAATT 991306 36 100.0 29 .................................... CTAATACAGCAGATAGAATAGAAAATAGA 991371 36 100.0 30 .................................... CCTATACCATTTGTTTGCTTTTTATAAACA 991437 36 100.0 30 .................................... ATATTGTACCTTACAGAAATGTAACTGTAC 991503 36 100.0 30 .................................... CCTTTGTGTTCTCCTATTGCATAGCAAGGA 991569 36 100.0 30 .................................... ATATTGTACCTTACAGAAATGTAACTGTAC 991635 36 100.0 30 .................................... CCTTTGTGTTCTCCTATTGCATAGCAAGGA 991701 36 100.0 30 .................................... AAATTAAGGAGCAACGCCAAACGCTAAACA 991767 36 100.0 30 .................................... AAAGATAAGACAATTAGAGTTAATATAAGG 991833 36 100.0 30 .................................... AATAATTGGGTAAATAAAAAGAAGAAAAAA 991899 36 100.0 30 .................................... GTAAAAGTTAAAAGGGTTTATAAATTATTA 991965 36 100.0 30 .................................... ATTTATTTTCTCTTAAACTCATTAAGATAC 992031 36 100.0 30 .................................... ACAGAAAACTATGAGCATAAGTTTGAAAAT 992097 36 100.0 30 .................................... TATCTGGGACAATGTTATTCTTTACAATAC 992163 36 100.0 30 .................................... TCTCCTTACTTATAAACCTTTTCTAACTCT 992229 36 100.0 30 .................................... TTATGGGTGTATAGGTGTAACGATTGATTT 992295 36 100.0 30 .................................... CTTCAATGGTTAGCAGATCACATGGGAATA 992361 36 100.0 30 .................................... GAGAGGTAAGAGAAAGCCATCAAAGAAGGT 992427 36 100.0 30 .................................... TAAAGGTTGTGGAGTTATAAAGCCTTTAGG 992493 36 100.0 30 .................................... GTGAAACGAAGTGAGGGCAAAGCCCTTTAA 992559 36 100.0 30 .................................... TTTAAAAGTTCAATTAACTTTTCTTTGCTT 992625 36 100.0 30 .................................... AAAAGTATAAGTGATTATGCAAGGTTAAGC 992691 36 100.0 29 .................................... ATTTAGCATTAGTGGAAAAGATATTAAAT 992756 36 100.0 29 .................................... ATATAGGAGAAACACACAAAGTAAGTGCT 992821 36 100.0 30 .................................... TTAATGCAGTATCAATGTACATATCTAGAC 992887 36 100.0 30 .................................... GCATAATTGTATAGCAATGTTTGATGAGGT 992953 36 100.0 30 .................................... TATAGTTTTGAGATAAAGGATATTACAATA 993019 36 100.0 30 .................................... TGGGTTAATGATCCAGGATATCTTAAATTT 993085 36 100.0 29 .................................... AAGATGGTTCTTATAAGTTTGTTACCGCT 993150 36 100.0 30 .................................... TTGATTAAACTTTTATAAAAGTTTATGGGT 993216 36 100.0 30 .................................... AGATTCAAACAGTTCTTAATTAAGCAAGGA 993282 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.6 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //