Array 1 2062-1571 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMS01000139.1 Thermus scotoductus strain 5_S5 NODE_225_length_2473_cov_53.5546_ID_449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2061 36 100.0 41 .................................... GCGGTAGTACATTCCCGTTTTAGCCTTTCCGACCAGACTAT 1984 36 100.0 38 .................................... GTTTGGGCGTGTTCCCCGTATCCCCAAACCGCCCCGGG 1910 36 100.0 39 .................................... GAGTTTTCTGCTCGGCGACAAACTCCTTACCGCACCTCT 1835 36 100.0 40 .................................... GGCCCTGGAAGCCCTGGGCCTGGAAGCCACAGGTGTACAA 1759 36 97.2 41 .....................A.............. TGGAATGTGGATCCGGCGGGCGGTAGGGCCCACAGGGGCGT 1682 36 97.2 40 .....................A.............. AGCTTTCCTTTGCACCCCAGGTCGGGTACCCTGGTCCTTA 1606 36 69.4 0 ....G.C.............CGGCT.A...A..C.T | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 94.8 40 GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : GGGTTACCGTTTCCCTCACTGCTTCCCTCAAGATCATCTGGAGGGTATCCTGATCCATGGGGTACCTCCTCTCCCGTTGGTACCCCCATTCATACACATACCCTTACACATAATTCCTTACACGACCCTACACGACTTCCTTGCACTCTATTGAACTCAGTCAAGCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTTCTTATCGACCGCTTCTACAGTGGCTTCGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATATGAATATTCCAGACTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTAC # Right flank : TTCCCTGCCTTGCCTCTCTCTTCACCCGGAGGCAGGGGTAGGGGCAATTGGGCTTCCCCACCTCCACCTGCCCCAGGATGGCTTCCACCGCCCGGTACAGCCGGGGAAGGACTTCCCTGAGAAGGTCCTGGGCTTCCCTTCCCGCCCAGCTCAGGATGTAGTCCCTGGCCCCCACCATCTCCAGGCCCAGCCTGGTGCCCACCACATAGGCCACCGCCTCGGCCTCGAGCTCCTTCACCCCACGGGGAAGCCCCCTGCCCGCTTCGTCAAAGTGCAGCAGAGCGTGCGCCCATTCGTGAAGCAGGGTGGCCGCCTTCTCTCCTGGGGGCAGGTCCCGATTCACCCGGATCACCCGCCCATCCGTGTCCCCGTGCCGCTCACCCAGGGAGGCTTCCACCACACGGAAAGGGCAGGCCTCCAACAACCTGGGGAAGAGGTCTTCCGGCCCCCTGTTCATGGGGGGTTCCGCGTGGGGCTGGCCATCGGGGTAGACCAGGGCC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 2089-1266 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMS01000003.1 Thermus scotoductus strain 5_S5 NODE_102_length_8101_cov_51.9052_ID_203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2088 29 100.0 32 ............................. GGGAGGCTGGCCGGAGGTGTCCTTGGCCTCGA 2027 29 100.0 32 ............................. CTCTCTATGTACCGCCTCGCCTCCTCCCCCTT 1966 29 100.0 32 ............................. AGGCCCCCTGTACCTCCACGGCAACCTTGCGC 1905 29 100.0 32 ............................. ACGCTGAACCAGCTCAGCCCCATCTGAAACAT 1844 29 100.0 32 ............................. AGGGGATAGAGGCGGTGGCCCTTGGCGGCCTC 1783 29 100.0 32 ............................. GGGAGAGGGGAGCACGATGGGGTCCAGGTCCT 1722 29 100.0 32 ............................. CCGGTGCTGCGCTTCGTGTTCGAGGACGATGA 1661 29 100.0 32 ............................. CTCACTCCGGGGGAGGCCCAGGCGGTCAGGGG 1600 29 100.0 33 ............................. GCGTCCAGCGTGCTTACCCTGCCCGCGGGTACC 1538 29 100.0 32 ............................. TGTTGGTAGACTATGGGGAGATGGTAGGGTTA 1477 29 100.0 32 ............................. AAGGCGCTTCAGGAGGGTGCGGGCGTCCACGT 1416 29 100.0 32 ............................. CCCTGGTCCATTTCCGATTGGGCACTGGGGTT 1355 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 1294 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.8 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCTACGTTTCGCGAAAAAGAGACCCTACTGCCCCGCCCTGCAGTTTCTTGGAAATTCATCGGTACTAGAAAGGGCGGAGAAGCCTTTCGGGCACCTACCCCTTCCCCAAGGACTGCGGCCCTCCCTTCAAAAGGAAGGGGTTCCTGCCGGTTATCCGGCAAGAAACCCAGGCGACCCGGGGCCGCTTACCGCCGCCTTCACTTCCGTCCTTCCCCAAGGGCCCATGCCGGTTCTTGAGGAGGACGCCCAGGCTGTAGACCCGCTTTCCCACCTTGACCACGAAGGCTTCCAGCCTGTCGCCCCGCCGCACCACGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4233-5662 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMS01000395.1 Thermus scotoductus strain 5_S5 NODE_54_length_13265_cov_79.2256_ID_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4233 29 100.0 32 ............................. CCGCTCGGTGCGGTTGAGGAGCCGCTGGAACA 4294 29 100.0 32 ............................. CCTCGCCCCTCCGCCCCGCTTGAGCCGGGAGG 4355 29 96.6 32 ............................C CCATGCGGGGGGAGGTGGCGGTGCTCGTCGTC 4416 29 100.0 32 ............................. GAAGCGCGCTCGTCCCTGGGGCAGGTCCAGGC 4477 29 96.6 32 ............................A CAGGAGGTAGAGATGCTGGAGATCGATCTTAC 4538 29 100.0 31 ............................. ATCTTGGACGATGACGATGGGAATGTATGCC 4598 29 100.0 32 ............................. GTGCCAGAGGAGAATCTGGGCACCATTCACTC 4659 29 100.0 31 ............................. GCCTCGGGTTCCTCCATCGGGAGCGGGTGGA 4719 29 96.6 33 ............................A GTGGAGGGGCGCTACGCCCTGCGGGTGGACTGG 4781 29 96.6 31 ............................T AGCCCGTCCTGGAGTACGGTGCCGGGCGGCC 4841 29 100.0 31 ............................. GCTTCCCAGGCGGGCCAGGGCCACTTCCAGC 4901 29 100.0 32 ............................. TATCCCGGATGAGATTGGCATTGAAGTAAGCC 4962 29 100.0 32 ............................. TTTGAAGAGCTTTTGCGTCCGTGGGAAGAGCA 5023 29 100.0 32 ............................. AAGGCTGCCGCCGAGGCCAAAGCCGCCTCCGA 5084 29 100.0 32 ............................. CCATCGCCTCCGGCGACCTGGCCGCCATCACT 5145 29 100.0 33 ............................. GATCCCCTCCTCATCGTAGGAGATCCAGAGGCC 5207 29 100.0 32 ............................. TTGCCGCGCCGGCGTACTCAATAACCGCGTGG 5268 29 100.0 32 ............................. CCGATCCGCGCCTGCTCTAGGTCGGCGTAGGC 5329 29 100.0 34 ............................. CAGTACCTCAGCGGCCCTGGCCTACATGCGCCAC 5392 29 100.0 32 ............................. CAAGGTCACCCCGCTCGCTCCCAGGCGCTGGA 5453 29 100.0 31 ............................. ATACGTTTCGCGCACATACAAGGCCGCATCC 5513 29 96.6 31 ............................T ATCGGCGCCCGGGAGCTCCTCGCGGAGCCCC 5573 29 96.6 32 ............................T GTCCGCTACGCTGCCACACACCAGTACGGGGC 5634 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 24 29 99.1 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : GGATCCTACCCGCCCGGGGGGCCTTTGGGACCTCGAGGGCGAGGTGGAAGGCGGAGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTTCCGAGGAGCCTTAGGGGGGACCTCACCCGCTTCTTCGTGGAGGTGGACACTGGCGTTTTCGTGGGCCAGGTGAGCGCTTTGGTCCGGGAGCTGCTTTGGGAGAAGGCTCTGGAGAAGGCGGGCGAGGGACGGGTGGCTATGGCCTACAGGGCGAACAACGAGCAGGGCTTCGCCCTCAGGCTTCACGGCTACACGGACCGGTTTTTGCGGGACTTTGATGGTATACTCTTAGTGAGCACTCGGAACGCCGAGGCAATGCGAAAAGCAGAGAAGTTGTCCAAGTTATTTGCGAGGTACGAGAAACGCCGTGCCAAAGCTTCCGAGGGGGATCTTGAAAAGGAAAATCCGTAGCCACTCCCAACTAGACACATAACGGGGGGTGAGCGGGCGTTTTTGCTGTCCTGGTCAAGT # Right flank : GGGCAGGAGGTAGAACCAAATGGGTGACGACTCCCCGGACTAAAGTCCAGGGCTTCTCGGGCATGGTATTGCTACCCCCGAAGGCCCCGTCCAGGCCCTTGCCAGGATGTTTTGGGCAGCGGCCACATCCCGGTGGAGAAGCGCCCCACACTGGGGACAGGTGTACGCCCGCACCCAGAGAGGCTTCTTCTCCCTATGGCCGCACACCGGGCAGTCCTGGCTGGTGTACTTGGGGTCTACCTTGATGACTCGCCTACCAGCCAAAACGCTACCGCTTGCGCGGTGAGCCGCCGCTTTGTAGGCGAGGATTGCGAGAAACTGGGCCCAGCCCGCATCGTGTATGCCTTTGGCTATATGGGAGCGGGAAAGGGCTTGAACGTTCAGGTCTTCGTGGACGATGGTTCCGTAGCGGTTCACCAGCTTTCTGGCCACCTTGTGGTGGAAGTCTTTGCGCTGGTTGGCGATCTTGCGGTGGAGCTTGGCTACCTTGAGCCTGGCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5059-5516 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMS01000440.1 Thermus scotoductus strain 5_S5 NODE_95_length_8437_cov_34.2698_ID_189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 5059 29 100.0 32 ............................. AGGTTCAGGTACATCACCCGGAGCTCGCCGAT 5120 29 100.0 34 ............................. GATGCCGTGGCCGCCGGGAAGCACCGGGAGCTCC 5183 29 100.0 34 ............................. GGGGCCATCCTCGCCCTCCTCCGGGGCGAGGCCC 5246 29 100.0 32 ............................. TACACGCAGCTAGCCCTGGACCTCGCGGGGGA 5307 29 100.0 32 ............................. TTGCGTCAGCCTTTTTGCGTGGTCGTGAGTGG 5368 29 100.0 31 ............................. GTCTTCCTCCTTCGCCGGGAGCCCGAGGCGC 5428 29 100.0 31 ............................. GGCCGGGAAGCTGCGGTGGTTCGTGAGGCAA 5488 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 8 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GCCTATCCATACATCCTCAGCGTAGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGTTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4401-5592 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMS01000443.1 Thermus scotoductus strain 5_S5 NODE_98_length_8216_cov_51.3072_ID_195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4401 29 100.0 33 ............................. CCCTGCAGCGTCTTGGCCTGCCGGTGAACCTTA 4463 29 100.0 32 ............................. CTCCGCGCCTTCTCCCAAGCGCTCCTCGCCCC 4524 29 100.0 32 ............................. GCCTCCTCTGGCCCTGACGAAGGACGCCCTGA 4585 29 100.0 31 ............................. AGCCCGGAGGCGGTCCTCCAGGGCAGGGCTA 4645 29 96.6 33 ............................A GGGTACATCGCGGGGATGCTCAGAGCGGCTCTG 4707 29 96.6 32 ............................C CATAGTCTCAGGCTCGGGCAAGGTCACGATCC 4768 29 100.0 32 ............................. GACTGGAGCCTGCGGGTCTACCTGGCGAGGGA 4829 29 100.0 31 ............................. GAGCCGGATCAGGCTCTTGGCGTAGTCCTCA 4889 29 100.0 33 ............................. CAGGACAGCGAGCCCCGTGAGCATGGCGAGAAC 4951 29 100.0 32 ............................. AGGGGGGTAGGTGAGGGAGGTAGACGCTCACC 5012 29 100.0 32 ............................. CTGGGGGAAGTCCAGCCCTACCGGACGGGCCA 5073 29 100.0 33 ............................. CAGGACAGCGAGCCCCGTGAGCATGGCGAGAAC 5135 29 100.0 32 ............................. ACCCTGCTTTCCCACTACTACGGGGTCCGGGC 5196 29 100.0 33 ............................. CTGGTGGAGGCCCTCAAGGGGGTGAAGGGGTGA 5258 29 100.0 33 ............................. GGGCGGGCACCCTGTCAGCACTCTTACACGCGA 5320 29 100.0 32 ............................. GGGGGCCGCACCTTCACCCAGGGCGTGGCCCG 5381 29 100.0 32 ............................. GAGGAGGCCCTGAGGCGCTTGGGGCCACCCCC 5442 29 100.0 32 ............................. TAGGGTCTGGGGGGGATGGTGACCTGCCTAGC 5503 29 100.0 32 ............................. CATCGGAGGAGGTGGGATGATGCGCAGGGCAA 5564 29 93.1 0 ..............C............T. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.3 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : GAGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAAGTCAAGGCCAGGATAGGGCCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTACATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGCAGACCCGTGGACCTGGTCATGGAGCACACCCTGCGGCCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6069-6954 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEMS01000009.1 Thermus scotoductus strain 5_S5 NODE_108_length_7596_cov_41.8903_ID_215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6069 29 100.0 32 ............................. AGCCACAGGCTCAGCCCGCACCGCCTTACCCC 6130 29 100.0 33 ............................. TAAAGCGTCCAGGTGGGCGGTTGCGCCCATCGC 6192 29 100.0 32 ............................. CCACCGGGCCCGGCGTAGGGCCCACCGCTTGC 6253 29 100.0 32 ............................. TTCGTAGCTTAGGTCCCTCCCAACTTTGTCCC 6314 29 96.6 32 ............................T TGGTAGCACCCCCGGGGTCATCGGGGTGGTCG 6375 29 96.6 32 ............................A TGGTCAGTTGGTCCGGGACAACCGGCTTTTCC 6436 29 100.0 33 ............................. ACCTTCCCCACGTTTGGCCGTGGCTGGATGCGC 6498 29 100.0 32 ............................. TATCTCCGCTTCCGGCTTGCGGGCGGTTCTAG 6559 29 96.6 32 ............................C GTTGTGGAACGGCCTCTCCCCCCACACCGTGC 6620 29 100.0 31 ............................. GGGGGGCGGTTGTATTGGCTCGGTACAACTC 6680 29 100.0 33 ............................. ATACGCGCGCTCTGAACTCGGGGCTGCCAAACC 6742 29 100.0 33 ............................. CTCATCCGGGGGGAGGTCGTCCCCCTTAATGTC 6804 29 100.0 32 ............................. GCCGCGGCCCCCAGGTAGGTCAGGGCTATGGT 6865 29 100.0 32 ............................. ACCGGCGCTACGAGGCGCTGGAGGCCCTCCTC 6926 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTAGTCCCCACACCCGTGGGGATGGACCG # Left flank : TTGGGGTAGGGAGCGGGCGAGCTTCTCCAAAGCGGTGCGGTACTGGCGGGTCGGGGCCTGGTGGTAGATGAGCCTTCCGGCAGCGAAAAGGGCCAGGGCCTCCACGGGATGGAGAGGTGGGGAACGATCCGGGATAGCGTACTCTCCTCGGCGGCGGCGCTCCACAGGGTAGCCGAGGTCTATCAGGGTCTTAAGGTCTCGCTCCACGGTACGTTCGCTCACGCCAAAGCGCCGGGCAAGCTCTCCTACCCGCATAGGCCGGAGCTTCAGCGCCTCGGCTAGCTGAAGCAGTCGGGCGCTTTTCGCTTCCTGTCCCATATCAGCAGTTTAAGGGAGTTTCCGGAATTGCTGCGTGAAGGTTAGCCGTGCTAGACTACAGGTGGTGCCCCCTTTTCCTCCCCTTCTTCCGGGGCTGCGGAGCTTGACGACATTACCTGTTCTGCCTCCCGAAAAGACACATAAAGGGAGGTAAGCGGGCGTTTTTGCTGTCCTGATCAAGT # Right flank : GGAAGTGAGCCCGGAAAGGGCAACTGGGGACGGGGTCAGGGAGCCTTTTAGAGCGGGATATGGCCCATGGGTCAGGGGTCACGGGGAAGCATACCTTGCAGCCCCCGTTCTTCAGAACGGGGAGTTGTCACGGCTAAAGCGGGAAAGGGGGTCCGGTTCCCCCACGAAGGCGTGGGCGGTCATGGGGGAATGAGGACGGCTTGTTCGGGAGCCAGGTGGGTTTCGCCAGCAAAACCCCCTTGCCCTTGAGGACCAAGGCCACCTCCAGCCTTTCCCGGTGGTAGGGCAGGGACTGCTCCTTAACGGTACAGATGAGGACCGAGGTGCCCAAAGGGGTCTCCCCCACCCCCTGGGCGGCGAAGGGCCGGCCCGGGGGCACGGAGAAGTTGGCGAACTCCCCGGGGTAGCGGCGGAAGATCCCCTCCCCCGTGGCCGGAACCAGGGCCCAGGCCCGGCCGGCCAAGGCGGAAACCAGAACCCCACCTGCAACCTGCAAGAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //