Array 1 219677-217136 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK074140.1 Legionella pneumophila subsp. pneumophila strain ATCC 43703 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 219676 37 100.0 35 ..................................... TTTTACGATTGGCCTCGTCAAATTGTCTTTTTTGT 219604 37 100.0 35 ..................................... GCCCTTCCAATTGCGATCAGCCCCCTTTTTAACAG 219532 37 100.0 34 ..................................... CCCGATGTTATTTTTGAAAGCTTGTTATATAAGG 219461 37 100.0 35 ..................................... TGATTGCAATCAAAGCCTATCCATAAATCATTACA 219389 37 100.0 35 ..................................... ATCACAAACTAATTCCGATGTACCATAATCCCAAA 219317 37 100.0 33 ..................................... AATCATGGCTAGGAGAATACCCAGAGGCTATTA 219247 37 100.0 34 ..................................... AAATTTAATCTCAATTCATCTCAAATGATTGCTA 219176 37 100.0 33 ..................................... ATTTATATCAAGACTATAAATTTATTTATTGTT 219106 37 100.0 35 ..................................... GGGATAGCAAGGCTCGATAAAACTTTCGTCATTAA 219034 37 100.0 34 ..................................... GAAGGAACTCCAAGGCAAAGTCGATCAATTGAAA 218963 37 100.0 34 ..................................... TGGTGTGCTCCAATTAAGCATTTCCCCCATTGAA 218892 37 100.0 34 ..................................... TAAAATAGGCTAGGGCTTTGGTTAAACGCTCTTG 218821 37 100.0 33 ..................................... AGAAAATATCACCCGAAACACCCCCAAAAACAG 218751 37 100.0 35 ..................................... AGAATAGTTTAGACTTAGGAGGTTTAGCTAGTCAC 218679 37 100.0 35 ..................................... CAGCATAAAGTTAGCAAAAGAACAAAACAAATTGT 218607 37 100.0 35 ..................................... ACTAAGATAAGAGGACTTTAAAAATGCTAGAAACA 218535 37 100.0 34 ..................................... CACTACCATTGTGTTTGCCTGTTGTTGCTGATAT 218464 37 100.0 35 ..................................... GCTATTTATTATATTATCTAAATCTGGGTCAGGCA 218392 37 100.0 32 ..................................... ATATTACTTTTACACCATTGTTCTAATACAGC 218323 37 100.0 34 ..................................... AAATGATGCTAGTACCTACCCTATTGTTCATGAA 218252 37 100.0 36 ..................................... GCTAAAATAATCTATGTAATAGCCTGCAAAAGCTTT 218179 37 100.0 35 ..................................... TATGAAAGTGGTAGTAATCATTGACATTTAACGTT 218107 37 100.0 33 ..................................... TATTATGGCGAATGTCGCAATGAAGATATAGTT 218037 37 100.0 38 ..................................... AGCGAAATAATTAAAGATGGAACTAACACACCTAAAGA 217962 37 100.0 35 ..................................... ACACGATCAAAATTTCTTTTTTTGAGGAAGCTTCT 217890 37 100.0 34 ..................................... ATTAATTCCATCTGTACGGACGTTTTATTGTTAG 217819 37 100.0 33 ..................................... TCTGAATAATATGCTAGACGTGGAATAAAAAAC 217749 37 100.0 34 ..................................... ACTTATCTGCATTAGCTTCACTTATTTCAGATTC 217678 37 100.0 36 ..................................... TCATAAAATTAATAATCTTTGCAAGTCGTTCTGGTT 217605 37 100.0 35 ..................................... TAGTTATGATGAACTTGACCAGCACTACTGGCGAG 217533 37 100.0 34 ..................................... CTGTAATAAAAAATATTGCCATTCCCATATTTTA 217462 37 100.0 35 ..................................... TACGCATAGCTTTCTTATATCTATTAAATCCATTC 217390 37 100.0 35 ..................................... ACAAATGGCTATGTTGTTGCGTATAATGCAGCAAA 217318 37 100.0 38 ..................................... TTTTTTAATGATTTTACAATATCGTGTGGAAAAATAGC 217243 37 100.0 34 ..................................... CTGTCGGCATAACTCTGTATATCTCTGTGTAGGC 217172 37 86.5 0 .......................TT...T.A.....T | ========== ====== ====== ====== ===================================== ====================================== ================== 36 37 99.6 35 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCCTATGGAATGCTTTCCGAACTGATTTTTGAAAAACCATGTACCAGAGGCTATATTATTACTGGTGAAAAGGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGTTCAAAGTGATTGAAATTTGTGCTAAAATAAAGAAAATTTTTGGCACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTGAAATCGTTATATGCTCGCTATTAAGACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTTAATTATTGCCTTCTTTTTCGAAAAATCAAGCCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCT # Right flank : ACTCCATACTTTATTCTCTGTATACTATTATAGTAAAAATCCATGGGGTATTATTTTATATAATTAAACAGAATTTAATTTTGTTGTATTTTAATTTCTTCGACAAACATCAGAAAATATAATCGGTCATTTTTACCAATTATTTGTAAATGTTAGATGCAGTTTTAGGGGCACAATAGGTCATATTTGGTTATATTTGCTTTTTTTCATCTTATTTATTTTATAATTAACTTGATAATTATAAAGTGCTATTTTAGTCTGTTGCTTTTTCTGACAATACCTGTCTTTACAGATTATCTTTGTAACAAATTTTCTTAATTTAACCTCAGCTCGATATAAGAATAAGGTTATGTGATTGATGATTCAAAAGCCAAACCGCAAGTCAAATTAGTACGCGGTCAACTTCAAATTATTGCATCAAGGAATATAGAACATAGACGCCAGCTGTTGTCAGATTGGTATAAGCAGAAAGCTTTTGAAGTTTTTAGCAAAAGGTTAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //