Array 1 1424233-1422480 **** Predicted by CRISPRDetect 2.4 *** >NC_009785.1 Streptococcus gordonii str. Challis substr. CH1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1424232 36 100.0 30 .................................... GGATTGTCATCTGGTCGTACATAAGTCACA 1424166 36 100.0 30 .................................... TCAGCTTTATCAACTTCACCTTCACCGTAT 1424100 36 100.0 30 .................................... TCCTTGAGCAAAGCGAATTGAAACGACTCT 1424034 36 100.0 30 .................................... CATTCAGATAGCCTTCAAATTTAGTCCCGA 1423968 36 100.0 30 .................................... AAGTCTATCAAGAGCAAGCTAACGAAATGC 1423902 36 100.0 30 .................................... ATGTTATTGATGTAGATGAGATGATGGCAG 1423836 36 100.0 30 .................................... ACAGGGTAGTCGTGACCTTCTTCTAGGTTG 1423770 36 100.0 30 .................................... TAGTACGTCACTACACTCTGCAACAGCGGG 1423704 36 100.0 30 .................................... TAACCAGCGTTTTTCTGCCATCTCCTGGTC 1423638 36 100.0 30 .................................... CAAACTAGAAAGTGGCCTGCTCATTTCATT 1423572 36 100.0 30 .................................... TCGTAGGTTTGGTATTTTATGTTACGATTA 1423506 36 100.0 30 .................................... CCGTAATTGTACGATTATTACAAGCAATCT 1423440 36 100.0 30 .................................... GGATATGTTTTAAAGGTGATAATAAATTGT 1423374 36 100.0 30 .................................... CACAATCCATTTTACATTTTATGCGTAAAT 1423308 36 100.0 30 .................................... CTTTCTTACCATGCTATACTAGAACCATAA 1423242 36 100.0 30 .................................... TCAATATCATCAAGTAAGATAGCGTTGATA 1423176 36 100.0 31 .................................... CATTGTTTGAGGGTCTACAGTAGTAGTAGTG 1423109 36 100.0 29 .................................... CGTAAACGGTAACCGCTTTGACTTCCTCG 1423044 36 100.0 30 .................................... TACAAACCCTTGAATCTGACCTCGGACTTG 1422978 36 100.0 30 .................................... TATTCACAAAGTTGTTGTATTCTTCTTTGT 1422912 36 100.0 30 .................................... CACATATGTATATTGATGGCTTCGAGTATC 1422846 36 100.0 30 .................................... GTCGGTGATAGTATGCCCGATTATTTAAAA 1422780 36 100.0 30 .................................... AAAACCTCTCCTACCTATTCCATCGACCTT 1422714 36 100.0 30 .................................... CCATTCCATTCATGGTTTTTGTTTCTTTGT 1422648 36 100.0 31 .................................... TAGGACCTTCAAGCACAATCACATCAAATGG 1422581 36 100.0 30 .................................... TAGTTGTAGACATGAAGTCTAAGCAGTTCA 1422515 36 80.6 0 .........................G.G..ATT.GG | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.3 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGACGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAGCGATTCATTATATATTGTTTTGTTTCCTTCAAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTTCATATGAGTTTATCAATAGAGGATCAAGTAGTATTAAAGATTTTAAACAAATTGTATCAGTATGAAATGAAAACAAAATTCAGTATTAAATTAGTCAATCCAATGTTATTAAAATATTTGGAAGAATAGTATTGACGAGTGAGTTTTAAGGCTTTATAATGTTTTTGAGATACAGAAACCAAAATTGACGAATTTGAG # Right flank : TTATGCTATACGAATTTATCCAAAAAACAACCACCTAAATAGGTGGTTGTTTCAGTATCTATCATTGCTTACTAGAAGAAGAACTTGAGTTGCTTGAGCTGTCGCTACTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATCAAAGAGGTCAATGGTCGATTCGCCCTTGCGTTGGCTGTAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAAGAGTATTTCTTGACATCTACCTTGCCCAAGTCATTACCCTCGTAGAAGCGAATCAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGGGTATTGGCAGCATTACGAATGTCATCCAGTTCTTTCTTGATGGTTTCGTCTGGATTGGTAATTTCCTCACCGGTTTGAGTGTAGTAAGTCCGTCCGTTGAAGCTAGTGTATTTTGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //