Array 1 55915-56797 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGSK01000017.1 Escherichia coli strain TUM18601, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55915 29 100.0 32 ............................. AACGGCAGCAGCCTGAACGATTGCAGGCACTC 55976 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 56037 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 56098 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 56159 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 56220 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 56281 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 56342 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 56403 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 56464 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 56525 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 56586 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 56647 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 56708 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 56769 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82498-83991 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGSK01000017.1 Escherichia coli strain TUM18601, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82498 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAAGTTTTCATTA 82559 29 100.0 32 ............................. GTCACGCTGGCCGGTATTGGCGGATTGATTGG 82620 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 82682 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 82743 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 82804 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 82865 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 82926 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 82987 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 83048 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 83109 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 83170 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 83231 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 83292 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 83353 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 83414 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 83475 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 83536 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 83597 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 83658 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 83719 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 83780 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 83841 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 83902 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 83963 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //