Array 1 136769-135249 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHXD01000002.1 Thermosipho globiformans strain JCM 15059 Tglo_002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 136768 30 100.0 36 .............................. CTTGGTTTATCTTTTACGTACGTAACGACTTTTAAC 136702 30 100.0 40 .............................. TTTAGGACATCAAGAAGATAAGAATAGACCAAAAGATATT 136632 30 100.0 42 .............................. AATGCCCATCGTGTTCAGCGTGAAGTATCAAAAGAATTATTA 136560 30 100.0 45 .............................. AGTATAGATCAAATGAAGGCACTTGCATAGTTGTAGGTTGGTTAC 136485 30 100.0 42 .............................. TCTATGCCTGCTATAGCTGTTCTAACTATTTTTAATATGCGG 136413 30 100.0 39 .............................. CTTCCTCAGATGATGTATAATCATTGATTTCAACATCAA 136344 30 100.0 34 .............................. AAAACACTTTCCTTCATCATAATAAAAACTAAAA 136280 30 100.0 44 .............................. AATTCTGTTAAAATACTTTTCTTTTCAAAAAGAAGAATGTTAAC 136206 30 100.0 39 .............................. ATCCTTATGTTTTTTGCAATTCTTGCTTTTTCTTTTTTG 136137 30 100.0 45 .............................. TTTTAATAACCATACTAACACCTCCATAATTTTATTTTTTCTGAG 136062 30 100.0 44 .............................. ACATTGGCGGTTTACGAAGAACAGCACATGCCTCCTAAATTGTG 135988 30 100.0 39 .............................. AATGCAATTATAGTTATGACAATAATTGCAAAAACTATG 135919 30 100.0 39 .............................. ACTGGTTAAAAACTGTGGCTAATTGCATGCGGTATCACC 135850 30 100.0 39 .............................. CCGATGTTTCATCTTCTGCTACGTTCTCGTCGGATTCAG 135781 30 100.0 40 .............................. CAATCAAAACCGCTCTATCATAATTCACACCATAATACAG 135711 30 100.0 43 .............................. ACCCATCTGCCCTTGCCAATTATTATCTTTGCAATTGTAACAG 135638 30 100.0 44 .............................. CTTAATGGTCAAGTAAGTCCTGTTATAAGCGGTTTAATGCAAAC 135564 30 100.0 41 .............................. TAAAAGACCTCTTGCCTTACCTTCTTCTAAATCATATGTTT 135493 30 100.0 45 .............................. GATATAAGGAAGATCATATCCCACGTATTTTTTGAATCCTTCTCC 135418 30 100.0 39 .............................. CTATTGTAGTTTCGGCTTCTAAAAATTCCGTTTCGTGCG 135349 30 96.7 41 ...................A.......... AAAACGGATCATCCGCAAGTACGACACATTCTAATAAGTCA 135278 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 22 30 99.8 41 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : AAAATTAACTATATTGTTATTATATAGTTAATCAAAAGTAAATTGTAACCATAAGTTAGTTTGTATTATGAACATTTTTAGAGGAATTAAAAAGACGTATATTATGCAATATAATATTATTAAAAATGACTTTTATCATAAAATACTTATTTTACTATTTCTTTAAATCTTGAAAATAAATTTAACCTTATTCTTGTAATATTAATTAAAAATAATATACATTATTTTTTAACCCAGGTTTTTGCGAGTATTAAATTAGCACAATAAAAAATATTAACTTTTTGTAACTAAGTTCTGCATACCCCAAAAATAATACGTTTATTTTTTGATTATTGTAACTTTTATGTTAAGTCACAAAAATTGTCTAACTTTCCGGGGGATCTTTTTATACTTGTTTTTTCGTAAAGCCTCTTAAATAAAAGATTTTACATTTTATTTACTTCAGCTCAAAGGTTTCGTTACTTGTTGGGATTGCTTGTATATATTATAATTATTACGGG # Right flank : TTCTTTATAAAATGTGGGCTTCTACAATGGTAACAATTTGGTTTAGTTTAGAATCTACCTATGACACCCTGGCCAATGTGAAAATTATTTTTCAATCAATCTAATCATTTTAGGATGAGCAGAGAGCGTGTCTATTAACATTATTAACTGCTGCCCTAGTAACATGTATGTAATCTGTGCCTTTAGCGTCCTTTCATTCATTCCTCTCATCTTTATCCTCTGCTTCAGCCTTTCTATATACCATTCTATTTCCCATCTTTTGCTATATATCAACCTATTTATTTCTCTTTCCATAAATTCTTTCCCTTTTCTTCCCCTAGGTCTTACATATAACTTCATCTTTTCTTTCATTTTTTCAATAAACTCCCATTGCCAGTACCCTCTATCTGCTAACAATATCGAGCCTTCTATATCTTCTAACATAATTTCTGCATGTTCTACTTCTCTATTATTTCCTATCTCAAAATCTAATAACACTTTTTTCTTTGCTTCATATAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 18202-18866 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHXD01000018.1 Thermosipho globiformans strain JCM 15059 Tglo_018, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 18202 30 100.0 43 .............................. CTACCATATGTCAAGCCAAGCTTAGCCTTCCAAAGCACACACG 18275 30 100.0 37 .............................. ACTTATTGAGACACTTTGGTTTCATAAAGATATTGAG 18342 30 100.0 42 .............................. GGTCAGAACAAAAAAAGCTGAAATAATTGAGGAATACGGGGC 18414 30 100.0 38 .............................. TTGGCAACACAATGTGGATAGAGTTTGAGATAGGGTTG 18482 30 100.0 42 .............................. AAGGTTCGAAGCGGGCACCCGCTTGAACCTGAAAGGATACAG 18554 30 100.0 40 .............................. AAAATATTATAATGGAGATATCTTGAAGGTTGTCTTCAAA 18624 30 100.0 42 .............................. GCAGTTCATGTTACAAGCAAAGCGCTTAAAAGAACGGTTAAC 18696 30 100.0 34 .............................. CGACAAAGACATACGTGAGGCTGTATATTTAATC 18760 30 100.0 47 .............................. ATTCACTTTCTCCCTTTAACTCAAGATAATCGGGGCTATATATTCTA 18837 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================== ================== 10 30 100.0 41 GTTTTCATTCCTCATAGGTAGATTCTAAAC # Left flank : TTATCTTTTTTATCTCATCTTTATACGCCCTTACATAAATATCTATCAAATAATCATCTTCGCTTTTAATAATACTTCTTAGTTTCACTAATCTTTCGGCAGGAACTTCAGGCTCAACTACGTAATTGTATATTGGAGCAATAATACCAAATACAAAACCTCCTAAAAATGGCCAAAATTTATTAACATCTTCATCTGCATGAACTCTAGCTAAAGATTCTACTTGTGATGGTGTTGTTAAAAAGCTTTGCTCACCAAAAGAGATTATAATAAACAAGCTTATTAAAAGAACTATGAAAAATTTCCTCACAAAAATCCCTCCTTTAAAATTTGCTTTACACTTATAATACGATTTAAACCTTTAAAATCTGACATAAAAAATTGGAGCAATTAATTGCTCCAATTAAAAAAAAATACAATATATTCATAGGTTCTCATAATTTTTTTATTAGTCCCTTTAAATATATAAAACAATTTTATCTTTTGCAATAAATAATACT # Right flank : ACTATAAATATTCTCATAAATAAATATAACAAGAAAAAGTAACAAAACCTTTGAGTGGAAGTAAACGGTAAGTTAAATCTAGAATTTATGAGCTTTTATTTAATTTCATCTTCGGAAACATCTCCTAAAAATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCATTCCTCATAGGTAGATTCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [85.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1056-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHXD01000004.1 Thermosipho globiformans strain JCM 15059 Tglo_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1055 30 100.0 42 .............................. ACAAATCTTCGCGAAACTGTAATCGTCCAATTTTATAAATGC 983 30 100.0 40 .............................. CCTCCCTAATATGGGAATACCTAAATTAGCTTTTAAATTA 913 30 100.0 41 .............................. AAGCGCCCCACAGATCAAATCCAATCAAAAGTAAAACCCTG 842 30 100.0 36 .............................. ATTAATTGATCGTTGTCAAAATCATCAACATCTAAA 776 30 100.0 43 .............................. ACTTCCCTTCGGCTTCTGCCCATTCCGTGCTCCAAAATTTCAT 703 30 100.0 43 .............................. CCATAATTGGGCTTTCTAAACCCACCGAGGGGCTCGAACCCTC 630 30 100.0 44 .............................. CCTGTATCCTTTCAGGTTCAAGCGGGTGCCCGCTTCGAACCTTG 556 30 100.0 45 .............................. AATCGGCCTCCACTAAAGTTTCTAGAAATTCTTCAATTTGTTTTC 481 30 100.0 39 .............................. ATGATTTCATCTTGGTGCTTGTCAATTTCTTCGATTTTG 412 30 100.0 33 .............................. TTTTTCCTCTAATTCAATAAGCCTTTTCATCAT 349 30 100.0 38 .............................. AAAAATGTAGCTTGAGACGTCTTGCTGCACTCTTAGCT 281 30 100.0 38 .............................. AAAAAAAAGAAGAGGCCTTAATCGGTCTCCACTAAAGA 213 30 100.0 39 .............................. TAGAATTGGCATAATTAAGTTCCGTTGGCTTTGACTCGT 144 30 96.7 0 ....................A......... | ========== ====== ====== ====== ============================== ============================================= ================== 14 30 99.8 40 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : TTACATGTCGAGAGTGCATCTACTTCCATTTTTAAATGATATACAAAAATCATATATAAATTTTTATCATGTTTTCTTTTGATTTACATAAACCTATATATTATCTTATTTATCTTGCTGCTAATTCTTGTATCATAAAAGCAATTTTTTACCCGATCTCAAACTATCTTGGCTGGACCACTAAATAACATTAGAAAAATTATATTAACAAAACAAAAATTTATTATTAACAATCAAAAATCACAAAAAATATTTTAAGATAAAACGTCATATTAACGCTTTTGTAACTAATTTCGAAAAAACTCTTTTTTACTAGTTTCCTGTTTTTATATTTGTAACTTTTATGTTAACAGATTAAAATTAGACAAATTTTTAGGAGATGTTTCCGAAAATGAAATTAAATGAAAGCTCATAAATTCTAGATTTAACTTACCGTTTACTTCTACTCAATGGTTTTGTTACTTTTTCCTGTTATATTTATTTATGAGGATATTTATAGG # Right flank : CTCCATTCTGATAAACATTTATACTGCTCCCCTGAAAAATTGGACAGAGAAAAAAGAGAGAGTATAATTTTTCACGAGGGGGAGTGAAAAGTATGAGAAGAAAGTTTTCTGCTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 411-1072 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHXD01000005.1 Thermosipho globiformans strain JCM 15059 Tglo_005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 411 30 100.0 38 .............................. TTCTTCCCAGGTATACAATTTATTAAAGATTTTTTTAA 479 30 100.0 42 .............................. ACAATAGCGCCTTCTCTGATATCGTCTGTTGTTAAGATTACT 551 30 100.0 36 .............................. AAATAACTCCCCGTCCGTATTCCTCCAAAAAATCAA 617 30 100.0 43 .............................. AACCGAGTAATAAGAACTTTGGTTTAGAGTCATCGTAAATAGG 690 30 100.0 43 .............................. TTGGTTCTTCGATATACTTTATATCCAGAAGAGATAAATTAGT 763 30 100.0 40 .............................. TGAATCGAATGTCTTTAAACCCATAAACTCTAAAATTTCT 833 30 100.0 36 .............................. TATAAGATTTAATTAAATCGACTAAAAAAAATTTGA 899 30 100.0 43 .............................. TTATGTTTCCTTCTTGTAATTCTTTCATTGCAAAATCATACAG 972 30 100.0 41 .............................. TTTGTATTTCATTTTTTGTCGGCCACACCTTATAACACCAC 1043 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =========================================== ================== 10 30 99.7 40 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : AGTACAAAAATAATTTTAGCAGGTGTAGCCCTTTTTTTATATTCTAATTTAACCTATTTTTTACTTTGGCCAGGGTCGCCAGGGTCTACTATAGGAAATTCCAAATCATTAACTGTAACTAAAATATAACTAAATATTAATAACATAAAATTACGTAGCTTTATTTTGTCTAGAATGTCGTCTTAACACTTTTGTAACCAATTTCGAAAAAACTCTTTTTTACTAGTTTCCTGTTTTTTATATTTGTAACTTTTATGTTAACAGATTAAAATTAGACAAATTTTTAGGAGATGTTTCCGAAGATGAAATTAAATAAAAGCTCATAAATTCTAGATTTAACTTACCGTTTACTTCTGCTCAATGGTTTTGTTACTTTTTCTTGTTATATTTATTTAAGAGGATAGTTATAGG # Right flank : GTGCATTGTCCAAATTTTTCAAACTATTCTTACTTTTTTCTTTTAAAATATAGTTATGAAAATTTATGGATTGATTATCATAGAAAAGTTTCATTAAAAATTTCTAATAAAATAAATGCTCCATTCTTTCTGACAAGAATGGAGCATTCTTTTTATTTTTTAAAATCAATTTATAATTAAACAGCTATAAACTTTCTACACTTTCAATTGGATAATCAATTTCAGATAATTTTGCTTTTACATTTTCTAGGTTTTCGGTTTCAATTTCAACAGTTTTACTTTCTAATTTAACTTCAAACTTTTTTTCACCTAGCTCTTCTAATGCTTTAGTTATTCTCATAACACAATGTTTACAAGACATATCTGGTACTTTCAAAATAAATTTACCCATAAAAATCACTCCTTTTTTAAAATCTCCCTTTCATGATTAATTCTTTTTTTCTTTTGTATTCTTCTTCTGTTATTTCACCTTTTGCAAGTTTTTCATTTAAAATTTTTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 163616-161041 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHXD01000003.1 Thermosipho globiformans strain JCM 15059 Tglo_003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================== ================== 163615 30 100.0 45 .............................. TTAATTTGGATGTCCCGCCTGAATTTGAACCTTTAAAGAGTTTAT 163540 30 100.0 44 .............................. AATTTATATCCTACTTTAATTACGCCGTTCGCATAAACAGCAAT 163466 30 100.0 38 .............................. TTAATCTTGCTTCTAAAGTATTTGGCGTGGCAGATAAA 163398 30 100.0 45 .............................. CTACTTTTTTGTTCTTATTAATCGCATCCAACTGCTCTTCTAAGT 163323 30 100.0 37 .............................. TTGACGTTGCCAACCAGGTTCTGTTATTAAAGACTCT 163256 30 100.0 39 .............................. TTCTATCTCTTCTATCTCAAAACTCAGAAATTTTTTTAA 163187 30 100.0 42 .............................. TAATTCATCCTCATCAGTTTCTATCTCTTCTATCTCAAAACT 163115 30 100.0 35 .............................. AATCATATATTTTGTATAAAGAATCTGTAGAAATA 163050 30 100.0 43 .............................. TCCCCTCCTTCTGTTTTAGTTTAGACTGTCTTCTATAAGCCCA 162977 30 100.0 40 .............................. TAATATGGTTGGCCTTTAAGGCCAAAACGTCCTAAAATTT 162907 30 100.0 36 .............................. AAACTTCATCAAAGAAATAATTAAAAAGAGGATATA 162841 30 100.0 42 .............................. AAATATAAATTCACTTTTAATATCGAACAAGTACCTGCAGAA 162769 30 100.0 47 .............................. TCTCCAAAAACCAGTAACTTCATATAATGTAAAACCGTCAAAGTATT 162692 30 100.0 39 .............................. TTCGATTATTTCCATTGTTTTTTCTCTGTTTTTAAACAA 162623 30 100.0 43 .............................. TTTCATCTGGGTTAAACTCGATTGTGTCCCCCACTTTGTATGT 162550 30 100.0 41 .............................. AACGACACAAGTCGTCTTCACGCAGAACCGGGCTTATTTTT 162479 30 100.0 42 .............................. TAGTTGGTTTAATGATTTGATATTTTGTGATGAAATAGATTA 162407 30 100.0 34 .............................. TTATTTACATTAAATTTTTGTAATCGATTTATAA 162343 30 100.0 39 .............................. GCTCGCGGGCAATAGGGATGCATGCTGTCGGTCTTTCGT 162274 30 100.0 43 .............................. TTGTTAGTAGTACACTCTCTTGCCAAAAATGTAACTTAAGACG 162201 30 100.0 39 .............................. GTATTATTAATGTTAACTATTGCGGCGGTAACGTTCCTT 162132 30 100.0 39 .............................. TTTCAGCATCAATTATCGTTCCTTCATACGATATATAAT 162063 30 100.0 37 .............................. TTTCTTATCTTCTCAATCTCGCTTTCGATTCTTTCTT 161996 30 100.0 44 .............................. ACCCTTCCCTACTCAGATACAGGATGCTGTGTCTCATAAGAAAT 161922 30 100.0 44 .............................. CAAAACCTATTACATCTATTAACTTATCAAAGACCGTGAGTTGC 161848 30 100.0 43 .............................. TATTTTACAAATATCGGCGCTATGCCTGTTTGCGTTGTGCGAA 161775 30 100.0 40 .............................. TGGTAATTTCTCAAATTCCGAATAATTCATGTATAAATAA 161705 30 100.0 43 .............................. TCCTGTATCTTTTCAGGTTCGAACGGGTGCCCTATTCGAACCT 161632 30 100.0 40 .............................. TCAAATAATACCTATCTAAAACAGCGTCACAATCAATATC 161562 30 100.0 42 .............................. TCAATTTTCAGCATATTTAATGAAAATGAATTTGATAGATAT 161490 30 100.0 36 .............................. TGGTTAATGCAAAGATTATCCATTCAATCACTTCCT 161424 30 100.0 35 .............................. CCCAAAGGTATATAATTGGATAGAAAAAATAGATT 161359 30 100.0 46 .............................. TCTACTTCTTCCATTGAAATCGTTTTACTCATTTTTTTATCTTTAA 161283 30 100.0 36 .............................. TTCCATTGCATCTTTGAATCAGGCAAACCAATTTCA 161217 29 90.0 114 ................-...T........A ACCTATTTCTAAATCTAGCTATCAAAAGCGTTGTTTATGTTTAAAGTATGTCTATGAAGAAAGGAAGAGTTTTTATATTTTACATATTTTATAAAATCTGTCTTTGAAGAATAA G,A [161189,161193] 161072 30 76.7 0 .G...T......T..T...TT........A | A,T [161061,161065] ========== ====== ====== ====== ============================== ================================================================================================================== ================== 36 30 99.1 43 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : CTATTAATAACTAATAAGATAGATTATTTATTGTAAATTCCATTGATAAGCGTGTAAAATATTAGTTAAGTATATAAGTTTTAAAATCAAGGGAAATTTGTCAAAGATGTAATTAAATGTTTTATTAAGTAACTTTTATAATCATTTAACTTACTCTAGTTTTTTCTTTAGCTCGAGATACCGAAATGTCTTTAGAAATAATTTATTAACTAAACAGCAACTTAACATTAACTAATAAAATTATAGTTGCTGTTTCTAAAACAGAAAAGTATCTTAACATTATTGTAACCAATGTCAAAAAGCTCCTTTTTTACTAATTTCTTATTCCGATATTTGTAACGTTTATGTTAACAAATCGAAATTAGGTAATTTTTTAGGAGATGTTTTTAAGTAGGAATAATCGCAAAGGCGTATAAATTCTACATTTAACTTACAGTTTACTTCCGCTCAAAGGTTTTGTTACTTTGCTTTGTTATATTTATTTATGAGAATATTAATAG # Right flank : GGAGAGTTTTTAACTCTCCTTTTGTTTTTTAATTTGATTTTTTTGTTAAAACAGGGCTTTAACACAAAAAAATTGATATTAAATGCCTTTATGCTAAAAAATTCACGTATTGACATATTCGAATTATCAGGTTAAAATAATCGTGAAAATAATAACGTTATATTTTTCACGAATAAAACAGGTGATTATATGGTTATAAAAATTTGTATGGGAAGTTCTTGCCATCTAAAAGGCTCGTATGAAGTGGTAGAAAAAATCAAAGAGATGAATCTTGAAGGTATTAAATTGTATGGTTCATTATGTTTTGGAAAATGTGCTAATGGAATAAACATTGAGATAGATGGAGTATTGATTTCTAATGTTACGCCGGATAATGTTAAGGAAAAAATTGAGAAATTTTTAAAAGAAGGGAATTAGTATGGAAAAGTATATTATTTCAAATCAAGCCAATTGTAAATATTGTTATAAATGCCTTAGAAATTGCCCAGTAAAATCCATAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 186530-188118 **** Predicted by CRISPRDetect 2.4 *** >NZ_BHXD01000003.1 Thermosipho globiformans strain JCM 15059 Tglo_003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 186530 30 100.0 43 .............................. TTTCCCACTTTTTAGTGCATCTGCTATTAGATCGATTGTGTGG 186603 30 100.0 38 .............................. TTTTGTTCCTCCAATATCTTCAACTTCGTCTTCTTTTT 186671 30 100.0 42 .............................. ACTATAAACATATTTCTGTTTTTTTAAATGGTTTTGTATCAT 186743 30 100.0 39 .............................. CTTAACAGATTGTTTGTTCCTAAATAGATTCTTACATTT 186812 30 100.0 44 .............................. TTCATCCTCATCAATTTCTACTTCAACACAACTAAGAAATTTTT 186886 30 100.0 39 .............................. TTTTTTGCTGAATAGGTAGGTACCAATAATAGTAGCTAC 186955 30 100.0 44 .............................. CTGTTTTTGTGTTTAAAATTTTTTCAAGGATTTCATATGTTTTC 187029 30 100.0 39 .............................. CCCAAATAGTATCTGTGCGTAATTCTTCCACTTTTTCCA 187098 30 100.0 38 .............................. AGTAGAAAATAAAACGTCATTTAAAGGCAAGGGGCCCA 187166 30 100.0 41 .............................. CTCCAGAAAATCAATTTTGCTCAGTCTCACCATCATATCCC 187237 30 100.0 38 .............................. AAGAAGACAAGTGTTTCAACAAATAAATCTAGGAGTAG 187305 30 100.0 44 .............................. GTCTTGTCTGTAGGCCTACTTTGCGTACAGACAAAAAAATAAAA 187379 30 100.0 38 .............................. TAATTTTTTGAACCTTTATTTTCACCTCCTTATTATTA 187447 30 100.0 44 .............................. TTAAATGCAGAAGTTGCTCATAGGCGTATTAAAGATATAAATAT 187521 30 100.0 43 .............................. CTTGGATCAAATGTTGCAATAAATGTTGCTGGATGAAATTGGT 187594 30 100.0 42 .............................. ATTGCAGGGCAATTTTTTGTAAATGGGCAATCATAACAAATT 187666 30 100.0 40 .............................. AAATTGCGCTCGAAGATATGAAAATTCGACACAAACTAAA 187736 30 100.0 44 .............................. GTATACTTCTTTGTCTGTGTTCACTACTGTGCGAAATTGTCTCC 187810 30 100.0 41 .............................. TCAATATTTTCGTTTATTTTTGCATCTGTTAACAAAATAGC 187881 30 100.0 42 .............................. ACTGTATGACCGTTGTTTAAGGCCAAAACGGCCTAAAATTTC 187953 30 100.0 39 .............................. ATCGGTCTCCACTAAATTTCTTAAAAACTCCTCAAGTTC 188022 30 100.0 36 .............................. GATATAACCTCAAAAAATTAAGCAACATTTTTAAAT 188088 30 90.0 0 ..................G.....T....A | T [188111] ========== ====== ====== ====== ============================== ============================================ ================== 23 30 99.6 41 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : TTAGATATTTTATTGAGTAATTTTTGTGGTAAAATAATATTGAAGTGAATATTTTTCAGGGGCTACACCTCCTTGATAAAGATTATTTTTGGTACAAAAACAATTTTAGCAGGTGTAGCCCTTTTTTTATATTCTAATTTAACCTATTTTTTACTTTGGCCAGGGGCTTAGCTCGAGATACCGAAATGTCTTTGGAAATAATTTATTAACTAAACAGCAACTTAATGTTAACTAATAAAATTATAGTTGCTGTTTCTAAAACAGAAAAGTATCTTAACATTATTGTAACCAATGTCAAAAAGCTCCTTTTTTACTAATTTCTTATTCCGATATTTGTAACGTTTATGTTAACAAATCGAAATTAGGTAATTTTTTAGGAGATGTTTTTAAGTAGGAATAATCGCAAAGGCGTATAAATTCTACATTTAACTTACAGTTTACTTCCGCTCAAAGGTTTTGTTACTTTGCTTTGTTATATTTATTTATGAGAATATTAATAG # Right flank : ATTCTTTTGATAATTCTTATAATTTCATTGGAATTTAATATGGAAAAGATTTTGGATAGATCAAAAAAAGGAAGAAACAACTCTCAAAAGTTAAAACATAAAACCATGTTCTTATAATTCAACATAAAAAAACATGGCCCGTTTTGAGCCATGTTTTTTTGAATGTAATTATTTAAAACTTTATTATTCTCTCGCCTTCCTTTACCCGCCCAACTACTTTTCCAGGAAGATCATCAGTTTCTGAGACATATAATAAACCATATCCCATGTTAAACGTATTAATAGCCTCGTCAAATTCTACATATTTTAAAATCCAATCAATAAAATCCTTTTTTTCAATGTTTATTTCATAGCCTAAACCTCCAAGCAATCTTCTCAATGCCCTAGTAATTCCTCCACCTGTAACATGAGCCATTGCTTTTATTTTATCAAAATAAGGTATAATTTCCTTATAAATTCTTGTTCCTTTTAGTATATCAAAAGGCAAATCTCTTATATTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //