Array 1 1135-1823 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNEQ01000378.1 Vibrio parahaemolyticus strain F5_9 F5_9_contig378, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1135 28 100.0 32 ............................ AACGTTATCCGCAATTTGACTTTCCCACAATC 1195 28 100.0 32 ............................ ACTAGCCCAATGATACATATCACCAACATCAG 1255 28 100.0 32 ............................ AGCCGCCCTTGTCGCCGGCCCCGCCCACATAA 1315 28 100.0 32 ............................ GCACATATCGGTACCGCGATGTGATGCCAGCA 1375 28 100.0 32 ............................ AAAGCCGCCATAACCGCCAATACTCTCGATAT 1435 28 100.0 32 ............................ ACCAGCAAATGATTTGAACGCGCTTGCGGCTT 1495 28 100.0 32 ............................ CAACCACGGGCAACTACACCTCGCGCAACCCT 1555 28 100.0 33 ............................ ATTGGCCTTGCATGAGATTAAAGGTAGCTATAA 1616 28 100.0 32 ............................ TCGGAGCCGTTCGGTTCATCGTTGAACGCGTT 1676 28 100.0 32 ............................ AAGTTGTTAAGTATAGGGAAACGAATAAGAGC 1736 28 100.0 32 ............................ TATCACTTTTGTTGCTCAGGCTGGTTTAACTG 1796 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAGAGAATTGAACGCGATATGCAGAAAAAAGCTGAGCTTTGGGCGGCTGAATCTGGCAGGTCTCTAAAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAGACCAAACAACGTTCACCCGATAAGAGCAGTAGATTCCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAACTTAATCAACAAGGCAGTCTGGGAACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGTTATAAAATACATAGAGTTACAATAGATAGAATTTGGCAAGGTAAAAACATGATTTTTATCCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTATG # Right flank : GCTTAGAAAGGGGGATATCCAATACGTCAGGCGTTAACTGCCACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 24-891 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNEQ01000475.1 Vibrio parahaemolyticus strain F5_9 F5_9_contig475, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 ............................ TTATTAGGGGTACGACGTTTAGAAGTAGCCAT 84 28 100.0 32 ............................ AGTTAGAGCAGCTTAAGAAATTTCAAGGTGTT 144 28 100.0 32 ............................ ATAGAGTTAATAAAGCGTTTTTCATCATGAAT 204 28 100.0 32 ............................ AAGATGAGCGAAAGTAGGCCAATAGTAATCAA 264 28 100.0 32 ............................ TACTATTGATAACGAAGTATTCGGTTATCAGG 324 28 100.0 32 ............................ TTTTTGGGGGTATGGTAATGCAGAGGTGAAAT 384 28 100.0 32 ............................ AGCTAGTATGTTATCGCTTTCGTCAATGATGA 444 28 100.0 32 ............................ ATTGCAATGATCTTTGTATCGTGAGTTTCGCC 504 28 100.0 32 ............................ GTTGGGTGAATGTGGTGTACCTGTTCGCTTGT 564 28 100.0 32 ............................ TTGCCCAATACCAAAAGCAGACGCAATACCGT 624 28 100.0 32 ............................ TTGCCCAATACCAAAAGCAGACGCAATACCGT 684 28 100.0 32 ............................ TGTTGGCGTTAGTTCTATTTCCGGCTATGTTC 744 28 100.0 32 ............................ ACTTGGAGGAGCGCAATTTTGAGTGAACGTGT 804 28 100.0 32 ............................ ATACTGACGGCGCTCAACAGCAGGAAGCGCAT 864 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : GGGGGATATCCAATACGTCAGGCG # Right flank : TTTATGAAAACAACTGGCTTGCTCGACACATCGTTAACTGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //