Array 1 28955-28150 **** Predicted by CRISPRDetect 2.4 *** >NZ_AERV01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786 SEE.Contig100_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 28954 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 28893 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 28832 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28771 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28710 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28648 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28545 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28484 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28423 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28362 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28301 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 28240 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 28179 29 96.6 0 A............................ | A [28152] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47190-45087 **** Predicted by CRISPRDetect 2.4 *** >NZ_AERV01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786 SEE.Contig100_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47189 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 47128 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 47067 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 47006 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 46945 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 46884 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 46823 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 46762 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 46701 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 46640 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 46579 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 46518 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 46457 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 46396 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 46335 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 46274 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 46213 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 46152 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 46091 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 46030 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45969 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 45908 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 45847 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 45786 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 45725 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 45664 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 45602 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 45541 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 45480 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 45419 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 45358 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 45297 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 45236 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 45175 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 45114 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //