Array 1 1710-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_APNK01000078.1 Salinisphaera hydrothermalis C41B8 contig78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1709 28 100.0 32 ............................ TGAAGCGCGACCATGAGGTTTTCAGTCAGCCG 1649 28 100.0 32 ............................ CGGGCTCACGCCAGGCTGGCTGCCGAGCCCGG 1589 28 100.0 32 ............................ TCATCCTCGCGGCCGAGGTGGATGCGATCACC 1529 28 100.0 32 ............................ GCCAGCGGAGGGCAGATCGATGAGTAGCGCAG 1469 28 100.0 32 ............................ AGAACGCGGCATCTAGGGCTAGTACGGCGATC 1409 28 100.0 32 ............................ GGCAGTACGAAATCGACGTGCTGATGTATGGC 1349 28 100.0 32 ............................ GGTCTGAAAACCTCAAACTCCGCCGGCATCAC 1289 28 100.0 32 ............................ GATACGGCCAGCGTATATCTGCGGCATGCCCG 1229 28 96.4 32 .............C.............. GCCAACTCCGCTTCCGAGGGTCGCGCCGCGAT 1169 28 100.0 32 ............................ ACGTGCCGGTGTCGCGCGACGCCGAGTGGTTT 1109 28 100.0 32 ............................ GTTGTCGCCCGCCCCGCCGCCGGTGTCGAGAC 1049 28 100.0 32 ............................ GTTTCGCGAGAGCACGGTGACGACGACTTCAC 989 28 100.0 32 ............................ ACGGTAGCCTCGACGGCGAACGTTGTCGGATC 929 28 100.0 32 ............................ GATCGCAGCCGCGGTGCACTTCGAATCGACAA 869 28 100.0 32 ............................ TCAACCTCCCAGGGTGACCGAATGGCCCGCAT 809 28 100.0 32 ............................ GTTCGACTGGCACGAATACGAACACCTGGCCG 749 28 100.0 32 ............................ GTAATCGCCCATCCACTGATAATTGAGGCCGC 689 28 100.0 32 ............................ CTCGGCCGTAACGATCGGCCAGGACACGCGGG 629 28 100.0 32 ............................ GTCGCCGGCGAGCGAAAGAAAGCCGAGATCGA 569 28 100.0 32 ............................ TGCCGCGCAAGGGCCGCTGGCTCTACAACCAG 509 28 96.4 32 ................A........... ACACATGTTCAGGCCTCGAATGGGTTGTAGTC 449 28 100.0 32 ............................ GGCAATACCAGGTGCCATCTCGGTGCAGCAGC 389 28 100.0 32 ............................ AAGCACGTGGGCACGGATCTCACGTTGTCCGC 329 28 96.4 32 ................A........... ACCTCTTGACGAAGACTCGCGTTGTCGTCTGA 269 28 100.0 33 ............................ GTGATCGTGGGCCAGTTGAAATACAGGGCTTAT 208 28 100.0 32 ............................ CCACGCGTTGCGCTCGATGCCCTGGCGGATGT 148 28 100.0 32 ............................ AGCAGATACAGCGTGACGTGATACCGGCGCGC 88 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.6 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : TCGTAACGCCGACTACTTCTTCCTCAAAATCAAAGCCGCGTTTCCCGGTAAAGTGCGATGAACCGAAAAAAAGGGGCAACAGCAGAAAGCCATTGCGCC # Right flank : AAAAAGGTTCTTCGCAGATAAGCGTGAAAGGCGGCGGTGACCGCATGGCTTAAGCTTGGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1803-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_APNK01000011.1 Salinisphaera hydrothermalis C41B8 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1802 28 100.0 32 ............................ CTGGACGGCATGCCCGACCAGCCGAACCGGAC 1742 28 100.0 32 ............................ AAAATCGGGCGAGCCTTCCCCGCCCTCGATGA 1682 28 100.0 32 ............................ GAGACGACGAACACGCGCCCCTCTCGCACTTC 1622 28 100.0 32 ............................ TCCCGGAGGATCGTGGCGCCGTTCTCGAACGC 1562 28 100.0 32 ............................ AGCCGCCGTGCTGTTTCTTGATGGCCATTCCT 1502 28 100.0 32 ............................ TGTTCGTGCATCCAGTCGAGCACTTCATCGAG 1442 28 100.0 32 ............................ AATCAAGCGCATCTGGTGCGACGCCACGCCAC 1382 28 100.0 32 ............................ AGCCGATAGCAGCCGTGGCGGCCTTCGTACTC 1322 28 100.0 32 ............................ CATGCGCGCGTTGGCGCGGTTCGGGTCGGAGA 1262 28 100.0 32 ............................ GGTCGGGTTCTTCATCGATGAGCCGGATACAG 1202 28 100.0 32 ............................ AGGTTGGCAACGCGCTGGCTGATGCGCGTGGT 1142 28 100.0 32 ............................ GTCCCCGAAATGGTCGATGGCCATCGGGGAAT 1082 28 100.0 32 ............................ TGCCATCGGCTGGCCGCGCTTCACCAGCCAAC 1022 28 100.0 32 ............................ GCTGTCGACTTCGGCCTGTACCGATCCCGATA 962 28 100.0 32 ............................ ATAATGCAACTCCGCGCCCGAGTCGCCGAACT 902 28 100.0 32 ............................ ACCGTCTCGCAGCTCAGCGAGGTGCAGGCGAC 842 28 100.0 32 ............................ TTGGGTGATGACCTTGCCGTTGACCGTATCGA 782 28 100.0 32 ............................ CCGAAGAAGAAGAAGCCGAGTTGGGATATATT 722 28 100.0 32 ............................ AAGTATGTCGAAATAGAGGTGCGTCGGAAAGC 662 28 100.0 32 ............................ CGCAGCAGCCGGCCGGCGACCCTGGCTTTGAT 602 28 100.0 33 ............................ GCGTACAGGTCAACGTCGTTGCCAATTCAAGCC 541 28 100.0 32 ............................ TTTACAATTCATTCGCGTCCGGGCACTACAAC 481 28 100.0 32 ............................ CTGCCAGTACAAGTGGCGGGCCACCGTCTTCG 421 28 100.0 32 ............................ GATCCGCGCGACTATCCGATGATGACCGAGGA 361 28 100.0 32 ............................ TCGATGCGCTGAAAACCTTTGTCAAATTCAGC 301 28 100.0 32 ............................ AGACATAGACGACAAAATCGCTCGCCGAGCCC 241 28 100.0 33 ............................ GGCATACGACGCGCCGCATTCGCACTGGATGAA 180 28 100.0 32 ............................ TTCTTCGGTATCACATCAGCAATGTATCGATC 120 28 100.0 32 ............................ TGTTCGAGAACAAGAGCGGGCGCGCGTGCTTT 60 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : GATCGTATTGAAACACTCCTCGCCACCGGCTGGCTCAAAGGCATGCGCGATCATGCCGAGGTCGGTGAAGTGTTTCCGGTGCCCGATAACGCTGTGCATCGCACCGTGCGCCGACGACAATTCAAAACCAATGCCGATCGTCTCCGCCGGCGCCGCATGCGGCGCCACAATGAGTCGGAAACCGAAGTCATAGAAGCGATTCCCGAAAGCATCGAAAAACGGGTCACGCTGCCGTTCATCCAGGTTCGCAGCTCCAGTACCGGACAACGTTTCAGCCTTTTCATCGAGCACGGACCAAAGCAGGACACGCCAGAGCAAGGTCGTTTCAATAGCTACGGCCTCAGCTCGAGCGCGACTGTTCCGTGGTTCTGACCCTTTTTTCGCGACCGAGCTTACAAGTCGTACAATCAACGAGTTATAAGGCATCCCAGGAAAAGGGTTTACCGCCTATATTTCCTAATGTTCTTTAACAGTCAGATATTTAACTAGCAAAAACTCTA # Right flank : ACATGCCACGGTACGGTCCTGCACACCCTCGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13409-11521 **** Predicted by CRISPRDetect 2.4 *** >NZ_APNK01000011.1 Salinisphaera hydrothermalis C41B8 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13408 28 100.0 32 ............................ GATGAACGCGGCCATCATGGGCGCGGCGCTGG 13348 28 100.0 32 ............................ GTGAAAAGACGCGGCGCTTCAACGTCACGCAT 13288 28 100.0 32 ............................ ATCACGGCCGGCACGACGCTTGAAATCCCGAT 13228 28 100.0 32 ............................ AACGTGCGCCTCATTGGCCGCGTAGCGCTGGC 13168 28 100.0 32 ............................ CCGAATGCGGCGCACGCGACTGGGTTCAACAT 13108 28 100.0 32 ............................ AAATTCAGCGGCGGCGCCAAATACAACGCAAC 13048 28 100.0 32 ............................ GTAAATGCCTGGCCCGCTGGGCGCTCTGGTGC 12988 28 100.0 32 ............................ TATGCGGGTTACGTTCCGAAGCGATCGATGCG 12928 28 100.0 32 ............................ GGGCGGGACCGAGCCTGAGACGGTGCGTTTGT 12868 28 100.0 32 ............................ ACAGAACGGGCACGGCAACAGTTCAAACCCCA 12808 28 100.0 32 ............................ CGGCTGGGCAAGCCGTCCGGCGTATTTCGTTT 12748 28 100.0 32 ............................ ACGATATCCGCGCGAAAGCGGGAACCGACGAC 12688 28 100.0 31 ............................ GCTGGCGGGGTGGCGTAGCCATGGCCAGCGA 12629 28 100.0 32 ............................ TGACTCCGAGTTGTCCGTTTATCTCCAATCCT 12569 28 100.0 32 ............................ AGCGCGTCGATCTCACCCTGCCGGAACTCATT 12509 28 100.0 32 ............................ CATGAAACTGAAATCTCGCACGCCTGAACTCG 12449 28 100.0 32 ............................ CTGTGCCGCTGCAGCCAGGGCCACTGGTACCC 12389 28 100.0 32 ............................ ACCGCAAAAAACACAGCCAGCAATACCAGCAC 12329 28 100.0 32 ............................ GAACGACTCTATGAAGTCGCGTTCATTGCCGG 12269 28 96.4 32 ........................A... TTCGATCCGAAAACCTGCGTGAAACAGTTCAA 12209 28 100.0 32 ............................ CGATGGAAAAATCGCGCGGTTTGGGCCGGGGG 12149 28 100.0 33 ............................ CGAACAAGGCGGCTGCGTTCGCGGAATACCCGA 12088 28 100.0 32 ............................ ACGCATGCCGCGAAACAACCCCGGAATTACGC 12028 28 100.0 32 ............................ CCGCATAGCCCCGAGGCACAGGCCGCTAGCCA 11968 28 100.0 32 ............................ GAGACGGGTAAAAACAAAATTTTCCTATCGGC 11908 28 100.0 32 ............................ GCCGAGCCATATGCCCCGGAAGTACTCGACGC 11848 28 100.0 32 ............................ TTGTTTTGTTCTTGTTCTCGGCGCTCCGCAAC 11788 28 100.0 32 ............................ TGGACGGCGTTTCGTTCATGGAGGGATCGCGA 11728 28 96.4 32 ............A............... CAATCCCGGCTCGGCTGCGGCGGGGCGTTGGG 11668 28 96.4 32 ............A............... AGTGCTCCAAGTGCTCGCGGCTTCGCCGCTGC 11608 28 96.4 32 ............A............... TCATCCTGAAAGCGTTCACGAGCAAATTGATT 11548 28 82.1 0 ..........A.C...A.......C.G. | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.0 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CAAGAACGCCCCCATCCTCCTGCTCGACGAAGCCACCGCCGCGCTCGACTCGGAAATCGAAGCCGCCATCACCGAAAACCTCCACGCCGTCATGGAAGGCAAAACCGTCATCGCCGTCGCCCATCGCCTGTCCACCATCGCCGAGCTGGACCGACTGGTCGTGATCGACCAGGGCCGGATCGTGGAAACGGGGACACACGAGGCACTGATAGCAGCCGACGGACTCTACGCCCGGCTTTGGGCCATGCAATCGGGAGGATTCATCGGCGCTTAGCACGACACATCGAGCTGTCGAAGTGACCCGGCGAGCCGACATTGCCAACCCCGGAAATGCTCAAGCTAAACTGGAGCGACTATCGGGCGCGGCTCGAACCCTTTTTGCGACGGCCAAATTCGCCCTCGTAAAATCAGCGACTTAGAAGCCGACCTAAAAATTGGGTTGTGCTTTAGAAAGCATGTTAGATCTTTAACAATCAGTCGCTTAGGATAAAATGTCTCTT # Right flank : GGCCCGTTATCCCCGAAGTCTTCGGCTCACTTCGGCCTCCGTCTGCGCGACTTCGGATGTACGACGCTGTTGTAAGTCATCGGCGGGCTATGCGTGGAAAATATATTTTCCAATGTAAATCATAAAATCTAGTCAATCACGAAGCTTTAAACCGCTTGCCGCGATCAACCTCCCTATCTATTTGCCAATTCGCAGCATCGTTCGATAAATTTCGTTAGGGGGACAAGCCAGCAGAAGTAATGGAAGATCTCGCGCCGAGCGATCTCAAGACGATCCTGCATTCCAAGCGCGCGAACCTGTATTACCTTCAGTACTGTCGCGTGTTGGTTAAAGGCGGCCGCGTGTCCTATGTCACGGACGAAGGGCGCGAGTCCAAGTATTGGAATATCCCGATCGCCAATACCACCTCGATTCTGCTCGGCACCGGCACATCCATCACGCAGGCCGCAATGCGTGAGCTGGCCAAGGCCGGCGTGCTTGTCGGGTTCTGCGGCGGGGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //