Array 1 96947-98072 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFQ01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44710 N44710_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96947 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 97008 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 97069 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 97130 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 97191 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 97252 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 97313 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 97374 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 97435 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 97496 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 97557 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 97618 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 97679 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 97740 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 97801 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 97862 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 97923 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 97984 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 98045 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114330-115987 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFQ01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44710 N44710_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 114330 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 114391 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 114452 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 114513 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 114574 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 114635 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 114696 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 114757 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 114818 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 114879 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 114940 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 115001 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 115062 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 115123 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 115184 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 115245 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 115306 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 115367 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 115428 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 115531 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 115592 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 115653 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 115714 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 115775 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 115836 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 115897 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 115958 29 96.6 0 A............................ | A [115984] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //