Array 1 1046411-1046865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077699.1 Salmonella enterica subsp. enterica strain CFSAN058591 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1046411 29 100.0 32 ............................. GAGAGCAGTAGTATGAAAAAATTGGTAATATC 1046472 29 100.0 32 ............................. AGATCCGTTAACGGGGATCAGGCGGCCTGTTT 1046533 29 100.0 32 ............................. TGGTCGCGGGCTGGAACAGTGTCTGCGCCGCT 1046594 29 100.0 32 ............................. CCGTCCACGGTACAACAATCAACGCCGGGAAT 1046655 29 100.0 32 ............................. GGCGTCGAACCAACAGTGCCCGGGCAGGATAC 1046716 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 1046777 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 1046838 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTATAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1063011-1064119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077699.1 Salmonella enterica subsp. enterica strain CFSAN058591 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 1063011 29 100.0 32 ............................. GATGTGTCAGGAACGATGCAAATTGCGGACAG 1063072 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 1063133 29 100.0 32 ............................. CGTCGCTTGCGTCCGGTCAGCGTGCGGGCGGT 1063194 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 1063255 29 100.0 32 ............................. TATCACTACCGGATCGGATCGGCTGAATTGAA 1063316 29 100.0 32 ............................. AATATATAGTTATATATATGTTAAATAACCTA 1063377 29 100.0 32 ............................. GTTTCTCCCTTGAGTAGTTCCTTTCGATAATT 1063438 29 96.6 32 ................A............ CAAAACTGGATTAATGAGGACGGGTACGAAAT 1063499 29 100.0 32 ............................. TTTACCCCCTGTTTACTGCAATAGCGCGGATA 1063560 29 100.0 32 ............................. GTCGCGGGTCGTGTGTCTGTTTTATTTGACGT 1063621 29 100.0 32 ............................. GAAAACTCTAAATCCAGCACGATTCGTTGTTT 1063682 29 100.0 73 ............................. CTATTAATGCAGATTCTAAAAGAATTGCAGAAGTGTTCCCCGCGCCACCAACTCCTTGGGGGAAAACGGCTTG 1063784 29 100.0 32 ............................. GCCAGCGCTAGCGCGCTCGCGAAATGGGAGCC 1063845 29 100.0 32 ............................. GCCATACCCACAACCTCCAGACGCCCAAGCCC 1063906 29 100.0 32 ............................. CAGGAGGAATCAACTCTCGACCCTGCTGAACC 1063967 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAGGAG 1064028 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 1064090 29 86.2 0 TAA.........T................ | A [1064114] ========== ====== ====== ====== ============================= ========================================================================= ================== 18 29 99.0 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //