Array 1 98009-99074 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPM01000018.1 Salmonella enterica strain BCW_4860 NODE_18_length_99127_cov_3.61071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98009 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 98070 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98131 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98192 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98253 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98314 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98375 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98436 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98497 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98558 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98619 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98680 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98741 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98802 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98863 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98924 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98985 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 99046 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : AATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-1067 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPM01000011.1 Salmonella enterica strain BCW_4860 NODE_11_length_182563_cov_3.66059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 63 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 185 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 246 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 307 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 368 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 429 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 490 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 552 29 96.6 31 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTT 613 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 674 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 735 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 796 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 857 29 100.0 31 ............................. CAGGTTATGCGCAAAAATTAATTCATATTAT 918 29 96.6 33 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGAG 979 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1040 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17200-18004 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPM01000011.1 Salmonella enterica strain BCW_4860 NODE_11_length_182563_cov_3.66059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 17200 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 17261 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 17322 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 17383 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 17444 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 17506 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 17609 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 17670 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 17731 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 17792 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 17853 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 17914 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 17975 29 96.6 0 A............................ | A [18001] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //