Array 1 929742-931357 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040061.1 Salmonella enterica subsp. enterica serovar Infantis strain SBO53 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 929742 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 929804 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 929865 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 929926 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 929987 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 930048 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 930109 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 930170 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 930231 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 930292 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 930353 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 930414 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 930475 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 930536 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 930597 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 930658 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 930719 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 930780 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 930842 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 930903 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 930964 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 931025 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 931086 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 931147 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 931208 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 931269 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 931330 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 947640-949537 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040061.1 Salmonella enterica subsp. enterica serovar Infantis strain SBO53 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 947640 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 947701 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 947762 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 947823 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 947885 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 947946 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 948007 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 948068 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 948129 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 948190 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 948251 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 948312 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 948373 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 948434 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 948495 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 948556 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 948617 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 948678 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 948739 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 948800 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 948858 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 948919 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 948980 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 949041 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 949102 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 949163 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 949224 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 949285 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 949386 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 949447 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 949508 29 93.1 0 A...........T................ | A [949534] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //