Array 1 6256154-6255147 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCNG01000001.1 Streptomyces sp. 1222.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6256153 29 79.3 32 .G..........A..C....A....C.G. ACGTCCAGGGTCCTGTCGTCAAGGCTCACGAC 6256092 29 93.1 32 .............A...........C... CACAAGCCGAAGTTCCGGGGGCAAGACGAAGG 6256031 29 100.0 32 ............................. AACACCTACCCCACCGGCGTCCACCAGGACGC 6255970 29 82.8 32 ...........G.A.....A.....CA.. GTCATCCGGCCGGTGCCGCAGTCCGGTTACTG 6255909 29 93.1 32 ...............A.........C... ATCGAGGACCGGATGGCCCGAGTCTCGGAGCG 6255848 29 93.1 32 .........C...............C... TGGACGATCGCCGGGCTAATCATCAAGCACTG T [6255839] 6255786 29 100.0 32 ............................. GCCGGCGAGGCTGCGATGGACAGCTCCGTGAT 6255725 29 93.1 32 ...........GG................ GTGCCGTAGCTCACCTCGAGCGTGATGCCGAG 6255664 29 82.8 32 .G.........GT...........AC... CACTGGGGCCTTTGGGGCCTGACGACGGAAGC 6255603 29 82.8 32 ...........GT...T.......AC... GCGCCAACGGTGACGGTGGGCGGTGTGGTCTG 6255542 29 79.3 32 .........T.GTA..........AC... GCTTTGATCGTTGAGCCGACGGCCTGCACTTT A [6255525] 6255480 29 89.7 32 .......T......A..........C... AGCATCAGGTTCTGGGTGGCCACTTCGAAAAT 6255419 29 82.8 32 ....A......GT............CA.. CACGGCTTCGGCCCCGTCACGATCGACTGGGG 6255358 29 86.2 32 .............A......A...AC... CCGCCCGTCGTCACCGTCACTGCGCGCACGTA 6255297 29 79.3 32 ..G.......TG.A...........C..A GTGGCCATCAGCATGCCGCCGACGTCGCGCCC 6255236 29 86.2 32 ...........G.AG..........C... AGGTCGATGACCTCGGTGAACTGACTGAAATG 6255175 29 75.9 0 .......AT..G.A.........G.T..A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 87.0 32 GTCGGCCCCGCACGCGCGGGGATAGGTCC # Left flank : CGAGACCATCAGAGCCGGGGACCGATTCACGTTCCGCACCGTGGTCTCCCCGACCAAGACGCGGGCGGACCTCAAACAGAAGGGCAAACCTGTCATCAAGCGGCTTCCGCACGCCCTACCCGCACACGTGCGCACCTGGTTCGAGGACCGCCTCCAACCCGCTGGAACACCCGCCACCGCGCCGAACGGTATCCCCCGCATAGGCGCCGACGCCGAGCAGACCACCCTCGCCATCCGGATGCTGCCGCCGGTCAGCACCGACCACCACAAGGGCCTGAAAATCACCCGTGCCGAAATTCGCGGCACCCTCACCGTCACTGACCCGGCCACCTTCACCAAAACCATCACTACAGGCCTCGGCCGCGCCCGCGCCTACTCTTGCGGCCTCATCCTGACCAGACCCACCCAGGAACGTTCCGAAGTTCAGGCAGGCACACCGCAGCTCGACGCAAGTGCATCAAATCGCACATGATCGCCACGAGAGTGCCAGCTCAGGGAGG # Right flank : TAGAATATCGCAGCGGGTGATCTCCACCGTGGAGTCGGCCCTATGCGCGTTGAGCCTAGCCGCGGCGTTTTTCCCTTCCAACGCAAAGAGGCTCCGCCCCTCTGTTTGGGACAGAGCCTCTTTGGCCATCACAACAAGCCAAACGTCTCTATAGAAGGAATCCAAGACGTGTAGGGATGCGGGTTCTGAAGAACGCCAGTCGACAGGGGACACCCGTACAACTGCGTAGAGCGTGCGAGGGCCTTCTGGACACTGCAACGGCGGCCAGTCGAGCGGGGTTGTCGACGTGTGTTCAACGAGCGCGGCAAATCATGCGCTGAGTGTTGACATCCCAATCGCAGTCCCGATACAGGCGGTTGAGGTCCGGAATGGCATCCGAGACGTCGGCGGCACACTCCTGCCAGCCCACGTCGGGGACCAGGCGCGCGAAGTACCCGTACGCGGTGGCCTCGGCGAACCCGGGGTATTGACCGGTCCATATGGTGTTGCAGCCTGCCCCG # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATAGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6264387-6267006 **** Predicted by CRISPRDetect 2.4 *** >NZ_OCNG01000001.1 Streptomyces sp. 1222.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================== ================== 6264387 28 53.6 20 .CTTC.TAGC.C..T....C....G..A AAGAGCGCGTCCATTCTGAT Deletion [6264435] 6264436 27 89.3 33 T.......T................-.. CTTGTTGGCGGGACACCAACGACGCCACCGATT 6264497 28 100.0 32 ............................ CCGGCCATCTGTGTTCTGGAGCTGGAAGCCAG 6264558 28 85.7 21 ........GA..........G....C.. CCTAAGCACCACCGCGACCTC Deletion [6264607] 6264609 28 82.1 32 A......T.A.A............T... CCAGACCTGGCAGGTCGGCCGGGTGCTGTTAA 6264670 28 96.4 29 ................A........... CACGGTGGCGCTGCGGCCTACTGGACCGA 6264730 27 89.3 31 ..G.........T-.............. GGGTCGGTGGGGTGCGGGTCCCGGATCCAGA 6264789 26 89.3 34 .......T..................-- TCGACGACGGCTTTGTCGGCGCCGGTCGGGAGGA 6264850 28 89.3 32 ..........T...TT............ CAGCAACAAGTGGGACGCCTACTTCGGTGTGA 6264911 27 92.9 32 ......G.........-........... CCAGAGGTCTCCCTGGGTGATCAGGTTCATGG 6264971 28 85.7 33 ..........A..G........G..C.. CCGGTTCGGCGGGTTCGTCCACAATGCGGATGC 6265033 28 89.3 32 ........T..............A.C.. CAGGGTTGGCGCGCCGACTGTGTACTCCAGGG 6265094 28 75.0 33 A..A...T....A...A.....C..C.. CCTACGATGTCATCGTTGAGGCGACGGAGGAAA 6265156 28 82.1 32 ......T...T.T..T.......C.... CCACAACGCGTATAAGGTCGAGGTCCACGAGG 6265217 28 92.9 32 AC.......................... CAACGGACAGTACGGGGCGCCGCAGCACGAGC 6265278 28 78.6 32 ...TA..T...C...........AT... AAGGCCAATGCCCACGCGGGCGAGGTCATACT 6265339 28 100.0 31 ............................ GGCCGGCTGACGTACGGTCTGGAGTACAAGC C,C [6265348,6265354] 6265401 28 89.3 32 .....T......G..T............ CCTCCTCGACCCCGCCAACGCCTGCTCGGCTC 6265462 28 96.4 32 ........G................... CCGACCCGCCGACGACGCTGAACAGATTCCAG 6265524 28 82.1 32 ......T..A..A....A....G..... CACCCCGGCGCCTGCGGCGTCACCAGGGCGAC 6265585 28 89.3 32 .....T.T............G....... CATGGTCTGGTTCGGCTGGAACGAGGCCCAGG 6265646 28 89.3 32 ...............T......G..C.. CATGTCGTAGACGGCGCCCTGAGTGAGGCACC 6265707 28 89.3 32 .....T..T...T............... TGGACGCTGCTCGGCCTGATCATCAAGCACTG 6265768 28 92.9 31 ..............A.......G..... ATGGCGTCCGCCATCGTCCGGCCGTAGCTGG C,C [6265777,6265783] 6265830 28 96.4 41 .....................A...... CACCCCGGCCCCTCGGAAACGGACTGCGCAGAGATCAGGTC 6265900 28 85.7 32 .C.CC.......T............... CCTACGGCTGCGCCCGCGGCTACGGCCTGACC 6265962 28 92.9 32 .......T............G....... CATGGTCTGGTTCGGCTGGAACGAGGCCCAGG 6266023 28 92.9 32 ...............T...........G GGTGTTCGGTGGGACGACGGACGCCCGCGGGA 6266084 28 89.3 32 .....A.T.......A............ CACGGTCCTGGCCACCTTTCTGGGCACGATGC 6266145 28 89.3 81 .....TT........T............ CAAAGCCGATGATCTCGTGGATACCTTCAACGAATCGGCCTCACGCACGCGGGTCACGGCTGTAGCCGGCCATCCGGCCGA 6266255 28 92.9 31 ......T.T................... ATCGGTGACATCCGTTACCGGACCTGGGGCG 6266315 27 78.6 31 .GTT......TT.-.............. GTCAGAGTGAACGTGCCGCCGGTCGGGCTAC 6266374 28 82.1 32 ..G......A..T......A...A.... TGGACGTAGAGAGGCGTCAGTGGCTTGGCGAT 6266435 28 75.0 31 ........GAGCTC.............T GACCAGGTGAAGATCTTCGGGACGCTGGAGA 6266495 28 82.1 32 .C.A......T....GA........... CGGCCGACTGACGTACGGCCTGGAGTACAAGC 6266556 28 85.7 31 .......G.A.A...........T.... CGCGGCGTTGCGCTGCTTTTCGGGAACCTGC 6266616 28 78.6 32 ........T..A....A....G..T..T TCTCCCCCCGGCCGCGGCCGCCAGGTGGGTCG 6266677 27 92.9 33 .....T...................-.. CGTACGGTGTCATCGTTGAGGCGACGGAGGAAA 6266738 28 85.7 32 ...........T.T.....T.....C.. CGTCATCCAGCGCAAGACCGGTACGGTCTCGT 6266799 28 82.1 32 A.T..T.........T......G..... CGAAATCTTCCCTGAGGCCATCGCCTGGTTCG 6266860 28 96.4 91 ........T................... ACTCCCGGCGTCTAGCAGTACACCGGCCTCAAGTTGGCCCCAGGCCGGGGGTAGCCCTTGCGCAACCTGAGCGGGGGCATGCGAGTCGAAC 6266980 26 85.7 0 ............GC............-- | A [6266991] Deletion [6267006] ========== ====== ====== ====== ============================ =========================================================================================== ================== 42 28 87.2 34 GTCGGCCCCGCGCAGCGGGGATAGCTCC # Left flank : GCCGTGCGTTCCGCCCCTATACCCGCCGCGGCAGGTCAATTCCCGTGACCGACCTCGCATCCGGCAAGAGCCACGGATCCGGCGACAGCAACGGCATCGCCGGCATCCGCGCCATCTCCCGCCTCAGCGAGCCTCCGATCGACGCCATCCTCCTGTACAAGCAGCCAAACGGCACCCTCACCTACGACCCGTCCGGACAGCAACGCGCTGACCTCGTCCGCCATGGCGCCCACTCCCCGGCCCGCCACCGACAACAAAAAGACCTCCTGCTCAACACCGCGTCCCTGCCCGCACACTGGTTCACTGGAATCAACGCCCTCCCTCTGCCCGAAACCTGGCCGATCGTCCCCCGCGCGGCTCTGCGAAACCGCTACGTCGGCTTGTTGAACCCCAGCACCGGGGCTTGCATCACTGGTCCCATCGGTATCACTTACGATCCCGTCACCGGCTTGACCAAGTGAAGGCAATAAATTCAGTCAGCTGACCGCAACAGCTAAGGT # Right flank : TCCGGGACGGGGAGGCCCGAGCCGGTATTCACGACATTGGTGTGGAACTTCGCATAATTCCCCAGGCTGAAGTTCATGGACGTCCCCATGGGGAAGGTGGAGTTGCTCCGCGGCGACCAGGCGGACGGCGCACTTCCCGGGCCGCCCGGCAACCAGCCGATCCTTTAGGTCCGAGCTGGGCAGTCAAGGATGAGCGCAGCTCATCGCGGTAGCGACGCCGCAGGCGTCCTTGACGGCCCGGCTCGGACCGGACACTTCACTGCCGGGCGGCCCGCCCCCTTCACCCTCGCCTCAATCGCACGAACGAGCGGGGACGACGGAGCCGGTCTGGGGAATTACATGACCGTCGACACATTGGCTCTGTGGCGGCGGGGGTGGTTCCGGCAATCCGTCGTGGGACTGCTCGGGCCTGATGTCGGCCCTGCGCACGCGGAGATAGCTCCCACGTCACCGTCTCCCGCGGCAAGGTCATCATGTTGGCCCCACGCACGCGTGGATAG # Questionable array : NO Score: 4.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.36, 5:0, 6:0.25, 7:-0.22, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCAGCGGGGATAGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [59-67] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //