Array 1 241470-241074 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTPO01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain EWH7 isolate EWH7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 241469 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241408 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241347 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241286 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241225 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241164 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241103 29 96.6 0 A............................ | A [241076] ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 259094-257602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTPO01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain EWH7 isolate EWH7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 259093 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 259032 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 258971 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 258910 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 258849 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 258788 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 258727 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 258666 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 258605 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 258544 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 258483 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTCCC 258422 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 258361 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 258300 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258239 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 258178 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 258117 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 258056 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 257995 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 257934 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 257873 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 257812 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 257751 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 257690 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 257629 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1066 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTPO01000051.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain EWH7 isolate EWH7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 62 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 123 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 184 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 245 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 306 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 367 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 428 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 489 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 550 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 611 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 672 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 733 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 794 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 855 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 916 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 977 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1038 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CGGAGGATGGAATATTTCCGAGGCTGGCGATTGTGTTCCCCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 487-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTPO01000058.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain EWH7 isolate EWH7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 486 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 425 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 364 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 303 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 242 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 181 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 120 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 59 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTGACGAGGTGCGAGCGATGGTATCAAGGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //