Array 1 20779-21309 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWK01000001.1 Nitrosomonas europaea strain ATCC 25978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 20779 36 100.0 35 .................................... TCCGTTTGCCTGAACATTGCCGACATTAATATTCT 20850 36 100.0 35 .................................... CACTGCCCGAGCAGTATTCTCCGAATCTACGCCGA 20921 36 100.0 35 .................................... ATAGGTCTCGTTGGGAAAGATTTCGGCATGGAATC 20992 36 100.0 34 .................................... TTAGGATCACCATAACTGATCGCGTTAGCCAAGG 21062 36 100.0 35 .................................... GTAGTAATTTTTGTCTTCTTTCTTGATTCTGGTTT 21133 36 100.0 35 .................................... AAAGTAATTTTTGTCTTCTTTCTTGACTAAGAGAT 21204 36 100.0 34 .................................... AACGCCCACCTATCTTTTTCAACAGCAGGATACC 21274 35 75.0 0 ...........A........A.CGCC.....-..TG | A [21291] ========== ====== ====== ====== ==================================== =================================== ================== 8 36 96.9 35 GAAACACCGATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : ACCGGATCACGATTCCGGAGATTGGGAATAAATATGAGAATAAGTGCACCACTACCCGGGTCCCATGCCAGCGGATCATTTTTTGAAAAGACAGGCAATGAGTGACTTTATCATCTGCTACGACATCACTGACCCACGCAGATTAGGACGCTTGTATCGTTATCTGATCAAACGGGCAGTACCATTGCAGTATTCGGTATTCCTGTTCAGGGGTGACGATCGTCAGCTTGAACGCTGTATACAGGATGCCATCGAGCTGATTGACGAAAAACAGGACGATTTGCGGGTTTATCCACTACCGGGCCGCGGCCTGAAAGCGCGTATCGGCCGCCCTACACTGCCGGAAGGCATACAATGGAGTGGCCTGCCGGCCAAATGGTAAAATATAATGTATCTGGAAGAAACAGTCGTTTAAAAAGAGGTAACTTGCAACATCCCATCAGTTTTCCTTATCGCCCTTTGCAATTTATTGATCTGGCGGAAGAAAAACACGGTGGTCA # Right flank : GCGTAAATGCGTTTTGTCTGCTGTTTTCCCCGGCCATATATATCCAAGAATAATTCAACGTTGGCAACGTAAACCCGCAACAGCTCCAGATACACCCGCTTTACTTGTTATACTGCTCAGCCTGAAAATAACTGATCAAAATTACATTGATGGAGGAGAAATGGATATTTTGAGTTTGGTGGCAGGATTTCTGGCGGGTGCGCTTACGATTTATCTCGCCAGTTATTTCATGAAGCCGAGTGAAAACAAGACACAAAAAACGGTCGATGCAGGCACTATCAATTTGTTCGATCAGTTGTGGCAGACACATGAGCGCTTGCTCAACGAAATGAAGCAGGATGTAGAAAATCCCGATTTCAAATTTCACCGGGAATTTTATGTGCTGAAAAAAGGCTGGGGGTGGGAGCGCTGGGGATTTCATCGCAGAGGTCCCTGTATCGCCTATTTCCTGGAGGATCACAGTGATCTGCTGCCGTTGCTGGATTCGCTGACTTCTTACG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCGATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 100413-99799 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWK01000004.1 Nitrosomonas europaea strain ATCC 25978, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 100412 37 100.0 35 ..................................... TGGCAATCCTTGATCCATAACGAGATGACTAGCTT 100340 37 100.0 35 ..................................... ATTGATGTTACAATCCGAGAAAACCGAGGCTCCTA 100268 37 100.0 36 ..................................... AGTGGCATCAGTAATAGATTTGTCAGGGTCACAGGC 100195 37 100.0 35 ..................................... TCTACCTCTCTTGATCTCCATCAGGAAATTGCCAG 100123 37 100.0 34 ..................................... TTTAAATCGCTAAGAATTACTGACCCTAATCTAA 100052 37 100.0 35 ..................................... ACATCGTAATAGGCTGCATTACTGGCCCGTGTCAA 99980 37 100.0 36 ..................................... ATGATGTATTCAGGTATCAGCGTCTGTGCCGGTAAT 99907 37 100.0 35 ..................................... CCGGTAGTCGACCTATTAAAGCCATCATTTAATTA 99835 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 100.0 35 GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC # Left flank : GGTTATCTTCCTTTCTTGGTTAGATAATCATGCTGATCATTGTTACTTACGATGTTTCAACGGAAACCAGAGCAGGTCGCAAGCGATTGCGCCGTGTTGCAAAATTATGTGAAAGTATCGGGCAACGTGTGCAAAAATCTGTATTTGAATGTCGTATCAATTTAATGCAGTATGAGGAGCTGGAGCGTCGTTTACTGTCTGAAATAGACGAACAGGAAGATAATCTGCGGCTATATCGCCTGACCGAACCGGCGGAGCTCCATGTAAAAGAGTATGGCAATTTTAAGGCAATTGATTTTGAAGGACCTCTCACTATCTGATAAACGCGAACCTGTAGCACCGGCTCAATACCGGCCAGTTCGCGCTACATCTAACTGTATGGTAACAAACAGGAAAATAGCTTCCTTTTTCTACTGTTCGTTACCGGCAGCCGAGAAAATCTTTACGTTCGCGCAAATTGCCCGAATTTTAAAGATGTATCAAGCAGTTATAGTTGTACT # Right flank : AGTTATTCTCTGAGCCACCTGCTGTTTGCACGTACTTGAGTGATTGGGTTCCTGTCCAGCGCAGTGCTATTCTTCAATATATGATTTCCATCGTAAACCAGTTTTGATTCACCACGATCCGGCTTGGAAAGCGTTTTTGTTTCTATGACATAGATACCGGATGAGTGGATGACGACATGGTCGAGATTAAATCCTTTTCCCGGTATATCGTGAAAAATATGACTTCCTTGGGCTCTTAATCGTTCAAGAAATTGCCCTACCGCAAGTTCTCCGGCCAAACCTAGCTTGATACGCTTGACTTCTTTGCGCCCTTTATAAATTTTCCATAGAAGTGTTGCGATACAAGGTATAGCCATCACTGTAAATAAAACCGGGTTTGGTGATGTTTGTGTATACCACCGTATCCATTCCCACGCGGCTATTAATACAAAACATAATGCTGCTATGAAATACGGAACGATACCATCCAGGAAAATATTCTGAAGACGGTGATTCAGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGTCACCAGACCGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.90,-17.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA //