Array 1 216852-216151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXOO010000002.1 Pseudomonas aeruginosa strain MB633 NODE_2_length_504548_cov_13.623257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216851 29 100.0 33 ............................. TGACGCGGTTTGTTCGTAAGATCCGGACCATGC 216789 29 100.0 32 ............................. CCCGCGAGCTGATGGCGGTCAACCATGGCTTC 216728 29 100.0 32 ............................. GAAGCAAACCACGGGCCATTTTGGAGCGGTAA 216667 29 100.0 32 ............................. ATACGAGGCGGACACGTCCAGGAGCTGGAGAT 216606 29 100.0 32 ............................. CGCAGCGTGCGCAGGAAGATGCGAGCTTTCAT 216545 29 100.0 32 ............................. CCCTGTCCGACGCAGAGCGGGCGCGGCGCTAC 216484 29 100.0 32 ............................. ACCCTGCAGCGATCGATCAAGCTGCAGATCGC 216423 29 100.0 32 ............................. CCGCGCAGCAGCTTCCAACCCAGCGGGATCAG 216362 29 100.0 32 ............................. GGGTTCAACGACTGCGGAAACCGTCCGGCACC 216301 29 96.6 32 ..............T.............. CAGCCAGCTTCGGCTCTCTGCATTGTTGAGCT 216240 29 100.0 32 ............................. AAGGCTTCGGCAGCCTCCTTTGATATCCGCGG 216179 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CCAGCTCGACAGCGCGCGGAACTTCATCGCCGCCTATGCCTTGGAAGGCGAGTGGCTGCCGAGAGAGCGGGTCCATGGCTTCGGGGCGCTGATTGGCCGACCCTTGGGGCGTCTCGAGCGGTGGATGGTCTCCATCAACTACAAGGGGGAGGAGCAGTACAGCCCGATCCCCAACGATGCCTGTGTCCTCAGCCATCGCGACCTGATCAAGGCGATGGTCGCGACTCCCGGCGACCTTCCTGTCTCCACCGACGAGATGTTCGAGCTCGCCCAGGCGGCGCTGATGAACCTCAAGAGCCGCGCCACAGTGCAACAGCACCAGTTGCGGCAACTGCGCCAAAGGGTCAGGCAGTGAATGCCCCATCGGCATCCTCTGAGCACCTCAAGATGGAGCACGCTGGTATAAATGGGGGCCTTCCGGGGTAGCGCGAACGCCCGTTTTTATCGGTGGAGTTTTTCCTGCTATTTTTCTTATTTCAAAACAATGATATACGGAAAGT # Right flank : GCGCTGCAGGTGATCCGCCTGACGCTGCGCAAGTGCCCCTACTGATGCGGGGGTTACCTCATGAGCGCAACCCTGGCTGGCTTGGGGCAGTAGGGGATGGCCGTAAACGGCATGGAGAGGGCGCCTTCTGGCGCCCTTTCTGTTTCTGCCAGATGAGCCCTGGGTTTTGATGTTGGCCAGGTGATGGTAGATTGCGGGCTTTTAGGAGGCTGGATATGGAAAGCGGCTCTTCTTTATTGCTTGGTTTTGTCCTTCTGATTGGAGGTGTTGTCCTCTACTTTTTACCTGCAATAATCGCTGAAAATAGAAAGCATCATAATAAAGGTGCGATAACTGTATTAAATGTGCTTCTCGGATGGACCTTAGTGGGATGGGTTGCCGCTTTGGTTTGGGCTGCGTCTGCCACAAGAGTGAGTGAGAGAAACAATTCTGTGGGTCGAAATAATCTAAATCTGCAAGCTCAAGCAAGTGATGTTCGACCATGTCCGTATTGCGCCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 271258-270557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXOO010000002.1 Pseudomonas aeruginosa strain MB633 NODE_2_length_504548_cov_13.623257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 271257 29 100.0 33 ............................. TGACGCGGTTTGTTCGTAAGATCCGGACCATGC 271195 29 100.0 32 ............................. CCCGCGAGCTGATGGCGGTCAACCATGGCTTC 271134 29 100.0 32 ............................. GAAGCAAACCACGGGCCATTTTGGAGCGGTAA 271073 29 100.0 32 ............................. ATACGAGGCGGACACGTCCAGGAGCTGGAGAT 271012 29 100.0 32 ............................. CGCAGCGTGCGCAGGAAGATGCGAGCTTTCAT 270951 29 100.0 32 ............................. CCCTGTCCGACGCAGAGCGGGCGCGGCGCTAC 270890 29 100.0 32 ............................. ACCCTGCAGCGATCGATCAAGCTGCAGATCGC 270829 29 100.0 32 ............................. CCGCGCAGCAGCTTCCAACCCAGCGGGATCAG 270768 29 100.0 32 ............................. GGGTTCAACGACTGCGGAAACCGTCCGGCACC 270707 29 96.6 32 ..............T.............. CAGCCAGCTTCGGCTCTCTGCATTGTTGAGCT 270646 29 100.0 32 ............................. AAGGCTTCGGCAGCCTCCTTTGATATCCGCGG 270585 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CCAGCTCGACAGCGCGCGGAACTTCATCGCCGCCTATGCCTTGGAAGGCGAGTGGCTGCCGAGAGAGCGGGTCCATGGCTTCGGGGCGCTGATTGGCCGACCCTTGGGGCGTCTCGAGCGGTGGATGGTCTCCATCAACTACAAGGGGGAGGAGCAGTACAGCCCGATCCCCAACGATGCCTGTGTCCTCAGCCATCGCGACCTGATCAAGGCGATGGTCGCGACTCCCGGCGACCTTCCTGTCTCCACCGACGAGATGTTCGAGCTCGCCCAGGCGGCGCTGATGAACCTCAAGAGCCGCGCCACAGTGCAACAGCACCAGTTGCGGCAACTGCGCCAAAGGGTCAGGCAGTGAATGCCCCATCGGCATCCTCTGAGCACCTCAAGATGGAGCACGCTGGTATAAATGGGGGCCTTCCGGGGTAGCGCGAACGCCCGTTTTTATCGGTGGAGTTTTTCCTGCTATTTTTCTTATTTCAAAACAATGATATACGGAAAGT # Right flank : GCGCTGCAGGTGATCCGCCTGACGCTGCGCAAGTGCCCCTACTGATGCGGGGGTTACCTCATGAGCGCAACCCTGGCTGGCTTGGGGCAGTAGGGGATGGCCGTAAACGGCATGGAGAGGGCGCCTTCTGGCGCCCTTTCTGTTTCTGCCAGATGAGCCCTGGGTTTTGATGTTGGCCAGGTGATGGTAGATTGCGGGCTTTTAGGAGGCTGGATATGGAAAGCGGCTCTTCTTTATTGCTTGGTTTTGTCCTTCTGATTGGAGGTGTTGTCCTCTACTTTTTACCTGCAATAATCGCTGAAAATAGAAAGCATCATAATAAAGGTGCGATAACTGTATTAAATGTGCTTCTCGGATGGACCTTAGTGGGATGGGTTGCCGCTTTGGTTTGGGCTGCGTCTGCCACAAGAGTGAGTGAGAGAAACAATTCTGTGGGTCGAAATAATCTAAATCTGCAAGCTCAAGCAAGTGATGTTCGACCATGTCCGTATTGCGCCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55037-55604 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXOO010000007.1 Pseudomonas aeruginosa strain MB633 NODE_7_length_247616_cov_11.261983, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55037 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 55097 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 55157 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 55217 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 55277 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 55337 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 55397 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 55457 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 55517 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 55577 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 66437-64129 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXOO010000007.1 Pseudomonas aeruginosa strain MB633 NODE_7_length_247616_cov_11.261983, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 66436 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 66376 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 66316 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 66256 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 66196 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 66136 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 66076 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 66016 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 65956 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 65896 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 65836 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 65776 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 65716 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 65656 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 65596 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 65536 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 65476 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 65416 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 65356 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 65296 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 65236 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 65176 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 65116 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 65056 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 64996 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 64936 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 64876 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 64816 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 64756 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 64696 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 64636 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 64576 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 64516 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 64456 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 64396 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 64336 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 64276 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 64216 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 64156 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //