Array 1 762011-762160 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635772.1 Anaerococcus mediterraneensis strain Marseille-P2765T chromosome contig00001 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 762011 28 100.0 33 ............................ CGACCTTTCCAGATTCAAACCTATATTCTTTTA 762072 28 100.0 33 ............................ TGAAAGCGTAAACGCTTCAAACCCTTTGTGGTG 762133 28 75.0 0 ...T.................AAAGCT. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 91.7 34 GTCCTACCCGCACACGCGGGGGTGATCC # Left flank : AGGTGGATTTAGTGAAACAATAAAAAATAGAATCTAGTATTTTGAATGCTTTGGGATATATTGTACGTTTGGAAAAGAAGAATGGGAGTAAAACTCCCCTGTGTGGGAGTATTACCCGAAAAATAGTGCGGAGCACGGAGAGCAGTGAAACTGCGGTTTTCGTTAGTCCCACCATCTTGGGTGGAAAATGCGAAGCATTTTTCATCTCTGAGATAAGCGAAGAAGCGGAGCTTCAAGCGAATCCAGAGAACTAAGCGAAGAAACTCGAAAAGAGTTTCTGAGAGGATTATCCCCTGTGTGGGAGTTTTACCCGAAAAATAGCGCAGAGTGCAGAGAGCAGTTTTGCTGCGGTTTTTATGCAAAAAAGATATTTTGTATATAGAAAATAGTTTTGTAGAAAAGTCATTTTTATTATAAAATAAATATAGGATAAAAATAGAAGTAAATGAAAATGGGGATTTGATAAAAAAGGAATGGCTAATTTGCAAGAGATCTTTAGT # Right flank : CCTGGGATTGAAATTAAATTAGGGGAAGTCATTAATATGCAAAATAGATGGTATAAAAATAAAAAAAATGATATGATTTGGTGGAGGGAGAACAACGAGCTTGGTCTTTGGGAGTTTTCTTTTGATAAATATAAGGTTTTTAATATGTTTAGAGATTATCCTCACGAATTAAGCGGTGAAGAAAAAGAAATCTTTGACAGAGAGAATCCTTATTGGAAAAATTTTTTCAAAGACAGATAAATGGTAGCTTAAAGAACACTCTTAGCAGCAGGCTATGGGGTGTTCCGGTATTTAGTATAGAAAAAATCATAGGAGGATTTTATGATAGTAGTAGTTGATGATTATAGAAAGTTAGTAGAAGAAGCTGAAAAGGATGGGTTTGAACAAATAGCTAACCCAGGTGTCCCAGTGTTGGATTTTAAAAAGGGGGATATTAGATTTTGTGTTAGAAATGGCCAGGTCCATGTAAATGAGAAATCTTTAGAGTATTTAGAGTCAAA # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 772404-773165 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT635772.1 Anaerococcus mediterraneensis strain Marseille-P2765T chromosome contig00001 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 772404 28 100.0 33 ............................ TATATTTTTTACGCCTTCCCAAGCACGCCCCCA 772465 28 100.0 34 ............................ TTAGCTTGGGAATATGAATGGATAACACTTGACG 772527 28 100.0 33 ............................ TTAAGGAGTAAATATGAGCGAAATAATGTTAAA 772588 28 100.0 33 ............................ CACAGTAGTAACCATTATAGAAGCACCAAGTGA 772649 28 100.0 33 ............................ TGGTTGTTATTACTTATGTGTAGCTAAAGGTTG 772710 28 100.0 33 ............................ TGAAGCAATTATCAAGTTTACCGAAGCTTTGAA 772771 28 100.0 34 ............................ TGATTGTTGCCATCTTCATCTGGTAAAGCTTCTA 772833 28 100.0 33 ............................ CAAGAACCCCAAATTCTAAAATCATCAGAGAGT 772894 28 100.0 33 ............................ TAGTGCAAGATAAATTTTTAGAAGAAATTAAAA 772955 28 100.0 34 ............................ TATCGGGCTTTTTTCTTTCGCTACTCATCTTTTA 773017 28 100.0 33 ............................ TATAGGAGGTGGATTTAGAAATGGCAAACATAA 773078 28 100.0 33 ............................ CTAAAAATAACAAAGTTTTACACTTTGTTATCG 773139 27 82.1 0 ........T........A.....-..AA | ========== ====== ====== ====== ============================ ================================== ================== 13 28 98.6 33 GTCCTACCCGCACACGCGGGGGTGATCC # Left flank : GAGCCATAAAAGTTGGCGAAAAATCAGAAGAATTTACCTGCCTTATAAAACAAGATAAGGGCCTAAGCGATGAAATAAAAAATCTCACAGGCCTGAGGGATTGTGATTTAGCAAAAGGCATAGATGAAAAAAGTGCTATAAATGACTTCATAGACTTTATCTCCGACCATATCCTAGTAGGCTACAAGATAGACTTTGATATTAAATTTTTAAACCAGGCCCTAAAAGACCAGGGCAGGGGGAAGATTGGCAACAAGACCTATGACATAATGAAATATGTAAAAAATGAAAAAATGTTTCTAAAAAACTACAAGCTAGAAACAGTCCTAAAAGAATACGGGATAGAAAAAACCCAACCCCACAGGGCCCTAGAAGATACAAGGCTAATGCAAGAGCTCCTAGTCAAAGTTGATAGCCTTGTAAAAAAATTAGAAAAGCAAAGTGAATGAAAATAAGGATTTGATAAAAAAGAAATGGCTAATTTACAAGGGATCTTTAGT # Right flank : ATTTTTTTTATAATAAAGGAGGTTTTATGGGTAGGATTAAATTTGATAGGTGGTTAGAAAATACCGGTTTTGATGGATTTACTTTTCTATCGTCTATAGGCTTTGAGGATGAGGTTTTTACCCTTAGGCTCGAGGGCAAATCTCAGGACTTTCCAAAACTTACTATGGTTTGGGAGGATATTATATCATACAGGGTCACAAATGAGTCCTACAGGGAGGACCTGTGGATATCTGATGAGGATGATTATTGGCCATTTTTTAGGACTGATACTTCTGCCTACATCAGAGAGTTCAAAGATAAAAACAATATTTTAAAAGATGAAAAAATCTATCATTTTATGGTCATTGGCGAAGAGGTTATAGATATTTTGGCAAAAAGTGATCCGAAAATTGTCCTTGATGACAAGACCATAAGGCCCTTTGACGAGATTGATGGGTCCTTTGTCGATGAGATTTATGGACAAAAAAGATTGGGTTTTGCCTTAGATGACCTAACAGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTACCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //