Array 1 563-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYG01000007.1 Ruminococcus sp. AM31-15AC AM31-15AC.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 562 36 100.0 30 .................................... ACCTGTGCAAACTGATTGATGATGAACCTA 496 36 100.0 30 .................................... TGCTACGGAGAGTGTGGAGAGCTTGGTGCG 430 36 100.0 30 .................................... CGTCAGGTGCAGTAAATACGAATGGGTCAT 364 36 100.0 30 .................................... TACCATGCAAGCATCACGGTCAAAGATAGT 298 36 100.0 30 .................................... AGCAATGATACATAGACTGAAAGGCGGTGA 232 36 100.0 30 .................................... ACTATGCTCTTTCGTGGCAAATATACACTT 166 36 100.0 29 .................................... TTTGGTGTAGACTTAACGGAATTTATGGA 101 36 100.0 30 .................................... TGTTGAATAGCCTGTAACGCCAGCATATGG 35 34 94.4 0 ..................................-- | A [11] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.4 30 GTTTTACTACCCTATAAAATTACACTACTCTCAAAC # Left flank : AAGCTAATCAAGGAGGTTGACACGATTGTTTTCATTTTGCCATACTCCCTGGCTCCGAAATAACGGCTCACAAGCACACCGGCTCCGACACCGGCTCCCAGTGCCACACAAATGAACACATTGGTCAATGCTGCACATGCACCGACAGCTGCAAGTGCGGAAGAACCAACAAACTGGCCGACAATAACAGAGTCGGCCATATTGTATATTTGCTGAAAGAAACTTCCAATAATCATTGGCATTGCAAAAACCGTCAACGCTTTGAAGGGCGTATCGGTTATCAAATACTCATCTTTCGACATTATCATATTCCTCCATGGTATCTTGTATCGTGGTGTAATCGGATTCTGTGCCGACTGATTCAACTTCAATCTGGCTATCGACTTTCCAATGTACAACGATTCATTCTCATCCAACGGAAATCACTGCCCATATCTTTCATCCACAAAAAAATAATCTATTTCCAGTTTTTGGTGTAAGAACAATATCCTGTCTTGGAA # Right flank : A # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTACCCTATAAAATTACACTACTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 883-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYG01000130.1 Ruminococcus sp. AM31-15AC AM31-15AC.Scaf130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 882 32 100.0 34 ................................ TGTAACTTCCCCAACATATAGATTGTAAAACTGA 816 32 100.0 34 ................................ TCCCCTCATGTAGAGGGCGATGGGGATAAGACCG 750 32 100.0 36 ................................ CTCGAGATACCAGCTTATAATACTCATCAGAATACG 682 32 100.0 33 ................................ CCTGAGGTCAGCATTTCCTCTGCCACCCCAGAA 617 32 100.0 35 ................................ CCCCCAGAAGACTTGTTAGACCTACCCATAAACAG 550 32 100.0 33 ................................ TTGTTGATGGAACTGACACATTTGACCCATCAA 485 32 100.0 35 ................................ CTGTTTAGTCATAACCCTTTCACCCTTGTGGAGTA 418 32 100.0 35 ................................ CATCAAGATAGAGCACCTTCGCTCTGCAAGAGCTG 351 32 100.0 33 ................................ TGACCCTACTGCTATTGCATATTATAGCTTTAC 286 32 100.0 34 ................................ GTCCGATTTCTTCAAGTTCTTAACTGCAAGTATC 220 32 87.5 0 ............................CTCC - Deletion [189] 188 22 68.8 37 ----------...................... CCATTTGCTTAACGGAGTCATAATGCTTTACGCCCAG 129 32 100.0 34 ................................ GGGAAACAGGTTCGGAAGTTTATGATATTGCTAA 63 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 96.9 32 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : AACTA # Right flank : TTCGTGAGCGTGTGAGTTGAAATTCTGTTAAC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-155 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYG01000018.1 Ruminococcus sp. AM31-15AC AM31-15AC.Scaf18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 1 23 71.9 34 ---------....................... TATTTTTCCAAAACTGAACCGTATTCCCAGTTGT 58 32 100.0 34 ................................ TTATTGTGACTTCAAGTGCGACTATTTGTGACTT 124 32 87.5 0 ..........................CA.TT. | ========== ====== ====== ====== ================================ ================================== ================== 3 32 86.5 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : | # Right flank : TTCGTTTCAACGCAGGACTTATCGATATTGAATAATACAAATAACCGCTCCGCTACGGTGAGGCGGTATTTTTATACCCAAATACTATACATTTTTCATGTGTTTTCCGTCAAATCCGCCAATTCACACCCCGAAATTTGTGCAAACAAATGATTTATAATTTAATTTGGCAACATTTCTGCAATTGTTGCATTTTTTCTGCAACAAAATACCCACTTTTCGTGTATAAGTAGAAGAGGTTTCACCACAAATCGGAAACCTTGCGGAGCGACAGTGTATGAGGAAACATTTTGTCAACGTGAGTTAGGTGAACACGATGAGAGGTTCTGATCGCACAGAAAAGCACTTCCTGCACTCCGTCTGAAGCTTGAAAATTGAATATTTATACCGAAACATCTTAGCTATACCCCATGAGCATACTGCTAAATTTAATTGTTATAACCGCCTTTGTTGACATTATTCATATAAAATGGTATACTTAAAATAAAATTTATACATAA # Questionable array : NO Score: 3.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.33, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 708-496 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYG01000002.1 Ruminococcus sp. AM31-15AC AM31-15AC.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 707 29 100.0 31 ............................. GAGCGGTTTTATAAAGCTGAAAAGGCTATCG 647 29 93.1 33 ........T...................T ACAATGGCTCTCTGTGCGTTGTAATAAGACCTT 585 29 100.0 32 ............................. TGGGTGGACTATGAAAATAAAAAATACTATCA 524 29 93.1 0 ..............T.............T | ========== ====== ====== ====== ============================= ================================= ================== 4 29 96.6 32 CTTTTCCCCGCATACGCGGGGGTGATCCC # Left flank : AAAGATACTAATTCCCACAGAGGTCGCCCTGTCGGACTTATAGGAAATAAACAGCAGGAAGAATGGCTGAAAAAGCAGGCTTTGAAAAACGGCTTTTCTCTAGAGGACGGAATGTGGCTGGTAACAGAGTTTAAGTGGTATGATTTTAAAAAGGGCGAGCGTAGAAACCATGTGAGAATACTTTCTGTAACATATGAGGGCGAGCTTACAGTAACAGACGAGAAACTTCTTAAAGTTGCACTTACTAATGGTATCGGCCGTGAAAAGGCTTATGGCCTTGGAATGCTGACGATCGTCGGAGTAAGATAATGGCACAACAAAATGGGATAGAGAAGCCAGATCCCCATGCACTGCCCACAATAAGCGACAGAATGACGTTTATTTATCTTGAACATTGCAAGGTAAGCCGTGAAAACGGTGCAGTCACCGCCACAGATCTTGACGGAACAGTGTATATCCCTGCGGCAGCCATAACAGTGCTGCTGTTGGGACCCGGCACT # Right flank : TGACTAATACTTTTAGTACACTAATTAGGTGAGGTATCATTATGAATGAAAAAACAGAAATTATATATTGACGAACTGGCAGAAAGCCAAGGGGTAGCATTTTCAATTGCAGTTGAGCAAGGTTTTGACCTGTGTTCATTTGCAAATATGTTTATGCTATCAGATGCAAGGAACCATATGGACAATGGTTCTGCATACTGGATGACAATGACACCAGATATAATGATTGATAAGCTTAGTATGAACTCTGTAGACAAGGCTACTATGAACTACGGTAAAACAATGGCTGAGTGGCTTGGTGAACTTTATGCAAGATACCAGTACTATACAAATATACCAAGTTCAAAAATAGTAAAAATCATAACACCAGAATTTATATGTAAAAGGTACAATGTACTGCATGATTTAGATATGGGCGTTGTAGTTAAGAAGTTATCAAAATCATTTGATAAACAGATATAATCATATAAAAATAAGTAACTGGAGGTAGGTAATA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26426-26591 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYG01000038.1 Ruminococcus sp. AM31-15AC AM31-15AC.Scaf38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 26426 32 100.0 35 ................................ GTTAGGATACCCTCCATAATTTCCATTTAGTGCAT 26493 32 100.0 35 ................................ ATGCAATAGGCAAAATAAATTTTTATCAACTGGAG 26560 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 36 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTGAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGTCAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCCGAGGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATATGTGAATGAACAGTGAACAAAATCAAACCGATACCCATTAAATAAAACAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGG # Right flank : CATTATCTACA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6079-6448 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYG01000041.1 Ruminococcus sp. AM31-15AC AM31-15AC.Scaf41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6079 36 100.0 31 .................................... AAGCCTGTTATACAAGTCCGTAGACCGAGGA 6146 36 100.0 30 .................................... TGCATTTATACGCTTCAGGATGCCATAAGC 6212 36 97.2 30 ..........G......................... ATCTCTGATAGACTAGGCTTTTTCACTTTT 6278 36 94.4 30 ..........G....A.................... TTCGTCAATCTCAAATGAAGCCTTTCAGGG 6344 36 94.4 30 ......T...G......................... GTTCGTTTGGCTTTGAGGTCACTACTATCG 6410 35 86.1 0 ..........G...........A.....G.-....T | ACC,G [6437,6447] ========== ====== ====== ====== ==================================== =============================== ================== 6 36 95.4 30 CTACTACACTAGTGCGAATTTGCACTAGTCTAAAAC # Left flank : ATTTTTGTCACGCTTGGGCAGAAATGTGCTTGGGGGTATGAGCATTTTTATCACCTCTTGTATCCATTATATCACAAATGTACTTTTTGTCAATATCATAGAAAATTATTTTGCTGAAATTGTGATATAAATGCCGTAAAAACGTGATAAATGTGCAAAAACATAGACAAAAAAGTTTTTTAAAATTACACTTTTGTTGACGATGATAAGGTGGTATAATGTATACAGAACAAAGGACAGGAGGTGATAAAAATGGGAAAGACGATCCTTACGGCTATCATTGTAGCTGTACTTGACTGCGCTATCGCAGCTGTCAAGGAGATAGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATGAAAATGCTTTATATAAAATAGCCACTTTCTATTGACATTTGTGTCTGAAAATGGTATAATATATATGTATTAAAGTGGCGATAAGATAAGTTTGGTGTTTTATCACAGAATACCATTGATTATTTTGTCAACTTTGAC # Right flank : TTAACATTAAAACCAACAAATAAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTAATATTTATGGCGAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGCTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGTCATTGCACCTGCGGCAGAGAAGAAAAAATCCTCCGTAAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCAAAAATAAAATGTACATAACCTCTTTCGGCAAGGGTAATTCTGCTGTGCTTGAATATGAGGTGGATAAGGTGGATGATAATGACTACAACAAAACTCAGCTTTCTTCAAAGGACAACAGCAATATTGAGCTTGGTGATGTAAACGAGGTAAACATCACTTTTTCAAGCAAGCATGGCTTTGGGAGCGGAGTGGAGATAAATACTTCAAACCCTACTCACAGAA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTAGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //