Array 1 33884-29971 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIJ01000032.1 Natrinema gari JCM 14663 contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 33883 30 100.0 36 .............................. AACACTGACGGCTGTCCTCGAGCTCGATAAGTCTGG 33817 30 100.0 37 .............................. TCGCCGGCGATCACCGCACAGTTCTCGAGGAAGCCGC 33750 30 100.0 36 .............................. GCCCACGACGGATCGCGGGCACACTCGGCGTCGCGA 33684 30 100.0 37 .............................. GGCCGGCCGTGCGCCCAGAGGCGCTCTCCCCAACAGT 33617 30 100.0 37 .............................. CGGTCCGAACTGCCGAACGTGATTTTGCCGTCTGAGT 33550 30 100.0 35 .............................. TTCATCTGCTCGCGCACCTCGTCGGGGCGCATGGC 33485 30 100.0 34 .............................. TGAGTATGACCAACGCTTCGATCAAATGGAGCGA 33421 30 100.0 34 .............................. ATGTCGTTTCGGGCGGGGAACGACGAACAGACGG 33357 30 100.0 35 .............................. CTGGCGTACGGCGTCGAACCGGACGATAACTCCCA 33292 30 100.0 35 .............................. GTATACTGGGACGACCTGGAGCGGAAGGCGAAGGA 33227 30 100.0 35 .............................. ACCGACGCCGCCGCCCACCTGATCGACGATCTCGG 33162 30 100.0 36 .............................. GTGCAGCGCGAGGGAGCGACCGCGAAGGAAATCCGT 33096 30 100.0 37 .............................. TTGGGCTCGATGCGGTCGGCGATCGTCTGGTGGCTCG 33029 30 100.0 36 .............................. TCGCCACTGGCATCACGGGTGTGTTGGTCTATATCA 32963 30 100.0 36 .............................. CTCGACGATGTCCACGACCGTCCCGCGGACGGGCGG 32897 30 100.0 34 .............................. GGATGTCTGTACAGTACCGACCCTAGTAAAGTTA 32833 30 100.0 34 .............................. TTCGGCCCGGGGCCGAGTAGATCGAGGTCTTCGG 32769 30 100.0 36 .............................. GTCCGTGGCGAGTGGGTCGCGACCCGCTGCCGACGG 32703 30 100.0 33 .............................. ATCGTCCCGTGGATAACCTGAACGAAGTGGCGC 32640 30 100.0 35 .............................. GTCGGCAGCTTCCCCGTCGTTCGCGAGCGCGGCGA 32575 30 100.0 34 .............................. CCCGGCGAGGAGGACGACGTCTCCATCCGCGCCG 32511 30 100.0 37 .............................. CCGCTCGAGCAGACCGGCGTCGATGTCGTCTGGTACG 32444 30 100.0 35 .............................. GTCGTCGACGAGGAGCCCGATCGGGACGCCGGGCG 32379 30 100.0 36 .............................. CACGGCCGATATATACGTCCGTACTGTCCCGTTTGC 32313 30 100.0 38 .............................. AACCCCGTCCTCCGACATCACGATCGCCCCCGTGTCTG 32245 30 100.0 35 .............................. GAGATCGAATCGGGATGGGCGTCGGCGAAGTCCTC 32180 30 100.0 36 .............................. GACGGGCTCTTGGAACGGCGAGCGCTCGTGCAACCG 32114 30 100.0 36 .............................. TCTGCCTTCGACAGTGGTGTCCCGTCGCCGATCCCC 32048 30 100.0 37 .............................. GGAAAGTGAACCGGGGCCTGTACGAGTACGTCCCAGA 31981 30 100.0 36 .............................. GGCGACGACGAGATCGAGGAGCAGACCGTCCCCGCG 31915 30 100.0 37 .............................. ACCGACGCGGACTTCGTCGGCACCGGGCCGAGCAACA 31848 30 100.0 36 .............................. GAGCATCGTGACGACGCCCGAGTCGCCGTCCTGGGG 31782 30 100.0 35 .............................. GTCACCCGCCTCGAGCCGGTCGCTGAACGTCTCCG 31717 30 100.0 37 .............................. CGCGCCTCGAGCATCCCCCGCGCCGCTTGGTAGATCG 31650 30 100.0 36 .............................. CCTGTCCGGCTGGCGGCTCCGGCGCGTCGAATCCGG 31584 30 100.0 37 .............................. CGAGGGAGCGGTAACGGTCCCGAAGACGGAGCAGACG 31517 30 100.0 31 .............................. AGCCGCCGCACGCGCCGCTCGAGGCGATCGT 31456 30 96.7 35 .............................C TGCGATAGTGTCCAACAGCGCCACGTACTCCGAGG 31391 30 96.7 39 .............................C AAACTCTTGGACCGCCCATGCAGAGCCGCCGTTGACTGG 31322 30 96.7 35 .............................C TTCCAGTCGGCAAATCTCATCTGTACAACGAGTGA 31257 30 96.7 36 .............................C TCGAAGTACCTGCGGTGGATACCAACGGCGCTGGCG 31191 30 96.7 35 .............................C CCACTCGTCGCTATCGTAGCTGGTGGGACCGAGTT 31126 30 96.7 36 .............................C ATAACCTGCACGGCTCCGTGCCAACGGTCATAATTA 31060 30 96.7 36 .............................C CCCCACAAGGCCGCTCAACATCTGTGCCTTCGCAGC 30994 30 96.7 34 .............................C ACCTTTAAATGTGTTCTAGTGTGATACTAGGATG 30930 30 96.7 35 .............................C AGTCCAACCTCCAAATCAACGGAGACCCGGCCCCG 30865 30 96.7 37 .............................C TCCGGCCTCGTCATAGTCCTCCTCTTGCGTGAGGCCG 30798 30 96.7 35 .............................C GAGATCGCGATCCCCGACGAGGACGTCGAGGACAG 30733 30 96.7 37 .............................C ACCCCCGATCACACGATCCCTGGAGACGATTTTGACT 30666 30 96.7 36 .............................C TGCCTGTGGCATCTATTATAGGGCAGTGTCTTCCTC 30600 30 96.7 37 .............................C CTCAACAGGCACCTCTGCACCCGGTTCATTCGCCATA 30533 30 96.7 35 .............................C ATGTTCAAGACACGCGTTCGGTGGTACGACACCGA 30468 30 96.7 42 .............................C CGAGGGCGTGGCGGGGTTTCGGCTTGACTCATTGTATGACTA 30396 30 96.7 35 .............................C CGCGCCGGCCTCGACGGCCTCACCCGACGAGTTGA 30331 30 96.7 36 .............................C TGGCTCGAGACGGCTAACCACGGCGGCATCTCACTC 30265 30 96.7 37 .............................C TGATACCGCATCTCGGTCGCGATCGCCTCGAGGGCCG 30198 30 96.7 37 .............................C ACCGCACAGAACGACGGCGTCTACCTCGAGCATGACT 30131 30 96.7 34 .............................C GCCACAGACCGCACTATACCCATCATGCTTGGCC 30067 30 96.7 37 .............................C TCTGCCGGGAGACGCGTCCGGTCGAACTCGACGCTAG 30000 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ========================================== ================== 60 30 98.7 36 GTTTCAGACGGACCCTTGTGGGGTCGAAGG # Left flank : ACAGCTTCATACGTCTTCGCGGATCTCTCGGACGTCCTCGACCGAGTCAACCTCGACGTCAACGTCAGCAAACGCCTGCGACAGAAACGTCCCTAATGGGGCGTCATCGCCGTCGTTTGAGGAGGCATCGTCGTCGTCCATAGTAGATGGATCGATGGCTACAGGCATGATTCTGTTGGTAATGCAATTCCGGTGCGTAGTGAATAACTGTACTGGGACGTTTTGGCGGCGGAGTGATCGTTGAACAGAAGAGCCACCCTCTTCGCGGTTGCGCTATCGTTTCTTGGACCCGGCTCAGATACTCCGACTCGGAGAGGTTGCCGTCGTCGACGCTCGAAACTCCGATCACTACGATCTGCGAGGGGGGGGTCTGGGCTCCGGGTATCTGAATGAGGGCAGCTAGTCATCGACCCCCGGGGGTAGACGGACTACTGGAGGTCGACGGAAGGACTTTATTGAGGGCGTGCTATACAGAGGCTGCAGCCCGGAAATCAGTCATG # Right flank : ACTGATCGTGTCTCGGAAATCGATCGCCGACGATGGGTAACGGTCGTCACTCCTCGAGCAACCGCTTCAGCCGATCGAGTTCGGTGAGCGCTTCGACGGGGGTGAGGTGGCCGAGATCGAGCGCCCGGAGTTCGGCGGCGACATCCGTCGGCACGTCCCCGCCGTCCGCGGTCGTGTCTCCCGTCGCGCTCTCCGTCGGTTCGGAACCGGGCTCGCCGCTCGAGTCGACAGCGCTGGTGGCGTCCGTCTCGCGGTCCGCCTCGGCCGCGTCAGCGACCAGTTCTCGCGACCGATCGACGACGGGGTCGGGAACGCCGGCCGCGGTCGCGACCTCGACGCCGTAGGAGCCCGTCGCCGCGCCGGGCGCGATCTCGTGGTGGAAGACGACCTCACCGTCGTCCTGATCGACCTCGAAGTGCAGCGTGAACGCGGCCGCGAGGTCCGCGGTGAGTTCGGTCAACGGGTGGTGGTGGGTGGCGAACAGCGTCGTCGCGCCGACC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGGTCGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 140500-143097 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIJ01000030.1 Natrinema gari JCM 14663 contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 140500 30 100.0 37 .............................. GGAGTCTGGTGCGTCGGGGCAACGAACGCGGTGGACG 140567 30 100.0 34 .............................. GCCGAACGGCCAGTGATCGGTGGGATGTCGGCCC 140631 30 100.0 35 .............................. GATGGCCTCGCGCCACTCGTCCTCGTCCCAATCGT 140696 30 100.0 35 .............................. TAGTCGGTGCTATCGGAATCGGAGTGTATCGTAGT 140761 30 100.0 40 .............................. CTGGGCTTCCTCGAGGAGTTCCTTTGCGCGTCGAACCAGC 140831 30 100.0 37 .............................. TCTCGAGTGTTGTTGGTATCAACTCTGAACACATACT 140898 30 100.0 36 .............................. CAACAGTACATGCGAATGGTATGGTGGCTAATCGAG 140964 30 100.0 40 .............................. CAGTACGAAGGTCCCGACGGCCCGCCAGAAACGTGGTCCC 141034 30 100.0 36 .............................. ACGTGCGTCTCTTTAATCTGATGGACTGGGTCATCG 141100 30 100.0 38 .............................. CACTCCGGCCAGAGGACCTCCTCGCGATCGTAGTCCTG 141168 30 100.0 34 .............................. CGGGGATGCCTTTCGTGTAGTCGAGCCGATCCAA 141232 30 100.0 34 .............................. AATGTCGTCACTCATCTCCATCACCGTCCTCGTC 141296 30 100.0 37 .............................. TGCGACAACGTGCTCACCTCCGTTGCGGAGAGACTGA 141363 30 100.0 35 .............................. CCTGATACAGCCCGTCCTCGGACTTTTCGCTATCG 141428 30 100.0 35 .............................. GCTCTCATCGTGCTCGTCGCGAGCGGCCGGCTCGG 141493 30 100.0 36 .............................. TCGGCCGACGGCTCGAGGCCGTCCTCGCCCTCGATG 141559 30 100.0 35 .............................. AAATTCGGGCGGGAGGACCATACACTCGTGAGCCG 141624 30 100.0 36 .............................. TTGCAACGTGGTGTTTACACCGTCCGGGCCGTCCGC 141690 30 100.0 36 .............................. TCTTTGCGTGCTATGTCCGTGCCGTCATTAGTGCCC 141756 30 100.0 37 .............................. ACCTCTTGCACGCCGCTTTCCCGGTCCTTTGCCGCCG 141823 30 100.0 34 .............................. CGTGGCGGCCCCTCGGTCGGCTCGAATCGGATGC 141887 30 100.0 35 .............................. CCGCCCATAGCCCACCGCGAAAGGTGGTTTCTCCG 141952 30 100.0 36 .............................. ATCATTTCGATGGGGGTGCTGGTGATCGGCTGGCTC 142018 30 100.0 36 .............................. AAGACACGGATTCGATCGCGTCGATGGAGTCGCGGA 142084 30 100.0 34 .............................. AAGGACACCGGCGCGGACCGCAAACGCCACCTCG 142148 30 100.0 36 .............................. CAAGCTCACGCAATGCGAACGGGTCATACACCGCCG 142214 30 100.0 32 .............................. GTCGTCAGCGAGACGTAGAGCGTGGACAGCTG 142276 30 100.0 37 .............................. TACTATAGTCGGACCGTCCGACCGCACCCGCCAACCG 142343 30 100.0 37 .............................. ATCGCTCGCCTGGATCGCCACGAGACAGATTCGCGTC 142410 30 100.0 35 .............................. TCGCAGTACGGTCGGGGGCAGTCTCCTTCGTCGTA 142475 30 100.0 36 .............................. GCGGGTCATGTGCCGATCACGCAGGTTTCCTGCTCG 142541 30 100.0 35 .............................. TCCCGGAGGATACGACGCGCCTCCCGGTAGACCTC 142606 30 100.0 37 .............................. TGGACGTGTCGTGAGACCTGGCCGCGCGAAGACATCC 142673 30 100.0 35 .............................. AGCCGGCGGATTCGCGCCCTTGAACCTCACGAACT 142738 30 100.0 36 .............................. ACGCCGAGTTCCGCGACGTAACCGGCGCGAAGCTGG 142804 30 100.0 37 .............................. GCCGAACTCGGTGAACTCGAAGATGATCGGTGGGATA 142871 30 100.0 34 .............................. CACGGACGACGAGATTCGTGCGGTGATCGAGAGC 142935 30 100.0 36 .............................. AAACTCAAGTGCTTTGCACCGACACGAACGCCGCAT 143001 30 100.0 37 .............................. AAACGCCAGCAGAAACGTACCGAACACCAGACAGCGA 143068 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ======================================== ================== 40 30 99.9 36 GTTACAGACGGACCCTTGTGGGGTCGAAGC # Left flank : GCACACGTGTCCGGTGTGTTACAGACGGACCCTTGTGGGGTCGAAGCCTCGCCGTAGTACGTCTCGATCTCCTGTTTGATCCCGGTTACAGACGGACCCTTGTGGGGTCGAAGCGCAGTCGGATCTCCATGCCGAAGTCCTCGTCGCTGCCGTTACAGACGGACCCTTGTGGGGTCGAAGCCCTGTCGACGTCGACGGAGGTGAGTCCGCGTGACGGGTTACAGACGGACCCTTGTGGGGTCGAAGCGATACCGACCGCGATCGTGTCATTTGCATTGAGGTGGGTTACAGACGGACCCTTGTGGGGTCGAAGCGACCAGAGTGACTCGACGTCGTCGGATGACGACTCCGGTTACAGACGGACCCTTGTGGGGTCGAAGCGTCGAGATGGCCGACGACGGCCCTCGGCGTCGCGTTACAGACGGACCCTTGTGGGGTCGNCAGACGGACCCTTGTGGGGTCGAAGCGTCGAGATGGCCGACGACGGCCCTCGGCGTCGC # Right flank : ACTCTATAAGAAGGAAAATAGGAACAGATTTGCGGTCAACTCTACTCGTGCCGATCAATTGACGATCTCCACGACACCCGACCAACTTGGCCGGTCAGAGACGTTGGAATCTTTGATCTCTTCAGAACCTAATACGGCCATTTCAGTCGGTTGAAAAGACTGTTTAGCCGATGTAAGGGGAACAGTATCCGATACCAAAATCCGGTTTCGACTGATGTTTGGGTAAACCCCAAACAACTGTCGGTTCCATTGGAACCATCCCCGACTATTTCGACCCGGCTCAATAGATGATAAACCGCTGTTCATACACAAACTGGAGACGGCCGTTTCGCCCGGCGAAAAAAGACGGTTTAGCTGACAAAAGGGACGACAGCGTTCAACACCAAAGGAGATCTCGGCCGACATTCGGGAAGCCCCGCCCAACTACCAGTATCAGTGGGTTAGTCCCGACTACGTCGAGGAGTTCCTAATCGCCCTCCGTGATGGAAACGTTGGCCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGGACCCTTGTGGGGTCGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 133934-133557 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIJ01000052.1 Natrinema gari JCM 14663 contig_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================== ================== 133933 30 100.0 35 .............................. CGTCTTTCTCGCGCCGACGTTGCGCGACCCGAACG 133868 30 100.0 37 .............................. CACTGGAACTGGAGTGGATCACCGATGACTACTGACG 133801 30 83.3 53 .....................N.AA.G.C. CTTGTAGGGTTGAAGCCACTGGAACTGGAGTGGATCACCGATGACTACTGACG 133718 30 100.0 36 .............................. AGTAGAACACGGAATAGTGGGTTAAAACTAAGTAGT 133652 30 100.0 36 .............................. GACGAGTTGCTTCCGCATCGCGACCGCGTTCAGGAG 133586 30 93.3 0 .......C........G............. | ========== ====== ====== ====== ============================== ===================================================== ================== 6 30 96.1 40 GTTTCAGAAGGACCCTTGTAGGGTTGAAGC # Left flank : GCCCCGAACCTGGCCCCGACCGCGGCGGCCTCGTCGGCTTCAACCTCGAGGGCGTCCACGCCCACGACCTCGCCTCGATCATGAACGACCACGCGGTCGCGATCCGCGCGGGCGACCACTGTACCCAGCCGCTCCACGACAAACTGGGCGTCGCGGCCTCGGCTCGCGCCTCGTTCTACGTCTACAACACGAAAGCGGAGATCGACGACCTGGTCGCGGCGATCGACAACGCGCGGCAGTTGTTCGCGTAAGCGAACGCTGACCGCGAGACACGACACGTTCACTGGCGCTCGAGGGCCGTCTCAGCAAGCACCGCGAGCCAAGGTTCGAAGTGGAGTTACCGCTTCGGAGGGATGAGGGAACTGTTCGCGTCCCCACCGCTCGTCTCGGAATTATGGAACGTTCGTCGACCCCCGGGAGGTATTCCAGAAGTAACGGTCGACGAAACGAGTGCCGTTAATCCAAGCGTATTAGATACTGTAGGACCGATATGAAGCATG # Right flank : AAGGTCTCTCCGGTCAGGCACGTCGGGACCCCTCACGTGCGAGGAGGCGACTCGAGCAACGACAAAAAACGAGTGCTCGGCGGCCCGTTATTCGCGCTCAAGGCTGCCGGGCGGGACGGAACAGCCACAGGGGGTGGCGGTGGCGTCACTGGGGTCGGTGACGGTCACGACCCAGACGGGACGGCCGCAGGCGGGGCAGTCGGAAAGCGACCAGTCGGTCGCGTCAGCCGCCTCATCGGCCGGCTCCGTCCTCGTACTGGCCGGATCGACCCGCTCGTCGTGACCGGTCATCGCGACCGCCGTGGCCGCTGCGGCCGGTCCCGAGCATCGGGCGCTGTCGCTGGTCGGTGGTGTTGATTCCGTCGTCGTGCGGGACGTTTATATCCCGGTAGAATGTACGCAATCATGCTTGCAACTTCCTCGGTGGGGATTGGAAGCCAGTCTCGGGTGCTCTGACACCCGGGGCATTATCGATACGTGACCCTCCGCTCGCGCGTTTG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.11, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACCCTTGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //