Array 1 1487487-1486259 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIH01000001.1 Vibrio metschnikovii strain NCTC8443, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1487486 28 100.0 32 ............................ TTGTTCTAATGTCGTCACTTGATGCGATTTCG 1487426 28 100.0 32 ............................ AGTATCGTCAACATCACCAACCTGCTGCTGCT 1487366 28 100.0 32 ............................ TCGGCTCTCAGGTCATGTGATGATAATCGTTG 1487306 28 100.0 32 ............................ GCATTACTGCGCCTTACGAATACAAGCGCCTT 1487246 28 100.0 32 ............................ TCTATACATCCTCATTAGTCTTTTACACTCTG 1487186 28 100.0 32 ............................ TTTCTTGGTTAGCTTGAGACCAATGAAGGCAA 1487126 28 100.0 32 ............................ TTTTTAGCAATTTCTTTAGCTTCTGTTGGAGA 1487066 28 100.0 32 ............................ GATCAACTTCAACAAAGCCGGATTTCTTTCCT 1487006 28 100.0 32 ............................ TATTCTCAGTAAGGATGGGAAAATGTGGTATT 1486946 28 100.0 32 ............................ CTAACCATAGCCCTAACCTCATTGGATGCCTG 1486886 28 100.0 32 ............................ GCTTGGCACATCCACTTGCCGCCGAATTTTTT 1486826 28 100.0 32 ............................ TCTCTGATTAAATAGATTTACGGTTTCGTTAC 1486766 28 100.0 32 ............................ TGAAATTAAAAAGCATTTCGAAGCGTCTTTTG 1486706 28 100.0 32 ............................ ATCAGCCATAGACGAACCTCACTTGTTAGGGT 1486646 28 100.0 32 ............................ TTCACTATTTGGGTAAGTACACACGGGCATAG 1486586 28 100.0 32 ............................ TTGTCGGACGAAGAATTAGCAGAGGTATCAAG 1486526 28 100.0 32 ............................ GTCTGCATCGGTCATTTGTTCTGATTTGGCTG 1486466 28 100.0 32 ............................ TTCCAACTTTTTACGTACTAGCTTAGAAGGCT 1486406 28 100.0 32 ............................ GAAATCCGACAAGCCGCCCGAGCACTTTATTT 1486346 28 100.0 32 ............................ AATGCGCCAGGCTCACCTTACCCTTGCTCTTT 1486286 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTTTTGCATGATTTACAAGGTTTAAACTGGCTTGGTCCGTTATCTGGTTACTGCCAAGTGAGTGAGATATTGGCTATTCCTGAACAGGTGCAATATCGAGTGATCTCAGTAAAGCGTAGCAATTTAAGTCAAGCGAAGCTCAGACGTTTGATCGCTCGCGGTAGCATCGATAAAGAAGGTGAAAAACGTTACAAAGTGAAAATGCTTAGCCAAGGTTTTGATAATCCGTACCTAGATTTATTCAGCAGTTCGACGAAGCAGGTACATCGTAAATTTTTTGAGTTTGGTGAAATACAGCCACTGCCAGTATCCGGAAAGTTTGATTCCTATGGGCTAAGTCATACCACTACGGTTCCTTGGTTTTAACCCTATTTTTTTGCTCTTTAAAAATAATCTTTAAATACAAATAGTTACATCGGGTGATTTAAAATAGGGTAAAAATACATTTTTTGCTCTAACTGCTTGTTGTAACTTATTTTTATGTTGTTATTCTATA # Right flank : CGCCGGATTCGATGGAATCAAACTCCCGCCAGTCATCCCCGCGAAGGCGGGGATCCATTCTGCAACAGATGCCAAGTGCTTAAGTGAGCGATCAATTGGCCACAGATTACTGATACTTCGCATAGATTCCCGCCTACGCAGGAATGACGGTTTGGTTGTGGTTTTGGGAGCTGAACTCCATAGATCCCCGTCATGTTTTGCCTGCTACTGCTGTGAGGCAGGGAAATGAAGGCGTAGCGATCATCGAAAACTGATCCACTAAATACACGTAGTCAGCATAGACTCCCACCTTGAGGGCAATGATGCTTGACGCTTTGAATACTCGATTGTTCACCTTGATTACAAGAAAGCGTGAGTTGTTTAACAATATGTGCGCCTAATTCCTTAGACACTACGTTGTATGATTGATGTGAGTGGTGGAATACATGAGCTCCCTAACGTTACCTTGCCAGCGAGAGATTGATCTCTCATCAGAGTTAAACGTCGTATTACAAGACAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 528280-527652 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIH01000002.1 Vibrio metschnikovii strain NCTC8443, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 528279 28 100.0 32 ............................ TTCTTGACATTGAAAAGGTTCAGTTACAAGTC 528219 28 100.0 32 ............................ TTTTGATTTATCCAATTACTTAACGTTTATAC 528159 28 100.0 32 ............................ TGTATATACACCGTACAGAAATGACAGCGTCA 528099 28 100.0 32 ............................ ATGCTTACGACTCATTTCATAAACATCATCGG 528039 28 100.0 32 ............................ GGACCTAGACAGAGCGCGTCCGCTTCGGGTTT 527979 28 100.0 32 ............................ GCCTTTGGCGACTGCTTGGCCGTCTTTATCAA 527919 28 100.0 32 ............................ AGTAATTCTTCCGATCGTTGTCCAGTCATTTG 527859 28 100.0 32 ............................ TATCTGGTATATCGTTAATAGTGAATCCAGAC 527799 28 96.4 32 ..............C............. TGCTTGGTCGAACTGGATGCCTTCGTCTTCAT 527739 28 100.0 31 ............................ CAAACTCGCTCTAATCCAAATCAAGCAACCA 527680 28 89.3 0 ...T.......T.T.............. | A [527656] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATGAAGCTCCATTGGCATATATGTACGAACAAGCATCTTTAACCGGGGTTTATTTTGGTTCTGAAACTGATGAAGCGTGCATTGAAATTATTTGTCTCATTTTACAAGGTCAGAATCCAAATGTTCGCTTTTGGCAAGGAAAGAAATGTGAAGACAAATTTGGCTTGAAGTTTGAAGAGTTTTTCTATACCTCGAATATTAAAGCCCAAGAGTTGGGTGTAATCTAATCACATAACAAACGCTTCAAGAGGGACAGCCAACGCGTGGCATTTTTACTGTGCGTTGATTTCGGTGGTTACGGTGTTATGCGGAAAGTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATA # Right flank : TTGGTGATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGACAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCTTTATTGAACCTCAGCAAAATCAATATATAAATTTTAATGGGAAAGCTTGGTCTGATTTAGAAGTTTTCCTATTCTAATTTATTGATATTATGAGTTTATTGTTCTTTTTTGTGGCGATTGAAAGTTGAACGATGCTTTGGTGTTTTTGTCGGGTTTTGCTCTGATAAATTGTGTATGCAAAAGGTTCGATTATCGCTGAAAAGTCTCTTTCTTTGGTGTTGCTGGCTCACTGATTCCACCGGCTATTTCGCTTCAGCATGTTTGGGATCTCATGAACATCTTGTTTGCTGAAAGTGTTTGGTGAGCGCAAGTTTATCGATGATTTGGCGCTTTTTTCCGGCTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 549729-549400 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIH01000002.1 Vibrio metschnikovii strain NCTC8443, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 549728 28 100.0 32 ............................ GAGAACGTATTGAATAAAACGTCTTACACATT 549668 28 100.0 32 ............................ TCACGGCGTCCCATACATGAGCCGGAGAATGT 549608 28 100.0 32 ............................ TAACCCGTTAAACTTTTTTGCAATGTTCGCCC 549548 28 100.0 32 ............................ AGCGTGCATTTGCCGCATCAAGCTCCTGCTCT 549488 28 100.0 32 ............................ TTGGTCAGTTGCATCGTTTGTATGCCGATCAT 549428 28 100.0 0 ............................ | A [549404] ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTCCGGCTCCGCCCTGATAAATTTTGTTCGTAAAAGATTCAATTGTCGCTAAAAGGTCTCTTCCTTTGGTGTTATTGACCCCTTGATTCCGTAGGCTAATTCGCTTTAACTTGTTTGGGATCTTATCGACAACAATGATTGCTGAAAGTAGGCAAGTTTATCATTTTGAGTTAAAGTTTCTTGAACCAATAAATGTTGGAAAAGTTCAATTTAATCAATAAGTAATAAAACATAACAAACACTTCAAGAGGGACTTCCAACGCACAGCATTTTCATTATGCGTTGATTTCGGTGGTTTCAGTGTTGTGCGGAAAGTTGGTAGTCGCGTTGTCAGCCCCTTAAGTGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCATTGATTTTATTAGTTTTTAGTGTAATGCAGTTAGTTGGTAGTCGCGTTGCTCACCCCTTAACGCGGCGTTAAGCAGCAGCTTGTAAACAATAACTTGTATACAAGCTACTGAGAGTACATATCAAGCAACTTGGATGTTACACCACTCGGCAATTTCATCCGCTAATGAATCTATCTTTACATGCGAGCCAACGTGAAAGTTATGTGGTTTTAAGAGCCAGATAAACTTGTCTAATTCGTTCTCGATTTCAATCTGTGCATCTCTTTTCAATGAGTCGTCAGGCAGCATTAAGAACACGGCATTCGCTTTGGTTTTTAGGTGATTAGATGCGATATCTATGTCTCTATATCCATCAAACAAATTGCACTTTACTCGTTGGACATCTGAATAGGCAGTAGATACAAGAGTAGCTACACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 576584-576136 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIH01000002.1 Vibrio metschnikovii strain NCTC8443, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 576583 28 100.0 32 ............................ TCTAAGTTCAGTTCCTGTCGTTAGCATATAAC 576523 28 100.0 32 ............................ GAACATATAGACGGATACGGAATTGTCAGGCA 576463 28 100.0 32 ............................ TCTTTTTTTTCATTCTAGCTTAAAAATCACGG 576403 28 100.0 32 ............................ TAATACAGACCCTCGTTCATGTGAAGGCGAAC 576343 28 100.0 32 ............................ TTGTAAGATTTTTCTATCGCTGCTCTGGCGAC 576283 28 100.0 32 ............................ AACGAATATCATTAGGTAAATAACCGAGCGCT 576223 28 100.0 32 ............................ GTCAAAGCTTGCATTGACTACGTTTTCAAACG 576163 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTTCCGGCTCTGCTCTGATAGCTTGTGTTCGTAAAAGGTTCAATTGTCGCTGAAAGGTCTCTTCCTTTGGTGTTGTTGACCCCTTGATTCCGCAGGCTAATTCGCTTCAACTTATTTGGGATCTTATCGGCAACAATGATTGTTGAAAGTAGGCTGGTTTTTCATTTTGAGTTAAGCTGCTTCGAACAAATGAAAATTGTAAAAGTTTAATATAATCAATAAGTAATAAAGCATAACAAACGCTTCAAGAGGGACTTCTAACGCGCGGCATTTTTATTATGCGTTGGTTTTTGTGGTTACGGTGTTATGCGGAAAGTTGGTAGTAGCGTTGTCAGCCCCTTAAGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAATTTTAAGTCATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAAGTTACTGATAGAGTTTCATT # Right flank : ATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGCAATGCGGTGAGTTGGCAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCCTTTGGAGGAAAAATGGAACAACTCAGGTCTTTAATAGAGCAGTTTCGGCTGGCTATGGAAGCTCTTAGCCCACATGACTTTGATGGGACTTCTCTTGCTGTAAGCGAGTTTCCTCATGCGTGTTGTGATGATTGCTCACAGTTATTGGCGGCTTATTTAACTGATAACGGTTTCCCTCAGGCAAAGTTAATCCGAGGTGAAAATGGCGGTTTTGGGCAAGAATTAGGCTCCCATGTTTGGCTATATTTGAATGGGCTGCATATTGACATTACAGCAGACCAATTTAATGAGTATGGTTATGAGAATCCATCTGTGATTTTATCTGATCACAGTGAATTCCTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 580704-580316 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIH01000002.1 Vibrio metschnikovii strain NCTC8443, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 580703 28 100.0 32 ............................ TTCGTTGCTGGCGCTGGCGTAACAATCATCGG 580643 28 100.0 32 ............................ AGTTGTGCGTTCAGCGAACCCCGTATAGTAAT 580583 28 100.0 32 ............................ AGTCATACCAAAGGGTAAGGACCCGAACGTTT 580523 28 100.0 32 ............................ AATAGACATTGGATTGACGAGAACCAAACGTC 580463 28 100.0 32 ............................ GCGCAGCCAAAAACGCAAAACACTCGCCAAGG 580403 28 96.4 31 .............C.............. CAAACTCGCTCTAATCCAAATCAAGCAACCA 580344 28 92.9 0 ...T.......T................ | A [580320] ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCCTTTCGAGATATCAAAACCATTTAAAGTGCTGTTTGATAAAATAGGAATGGTTGAAAGCCGATTAACTGACATTCCTGCACCGAAGCACGAAGATTTCCCAACTTATGTTCATGGTGACAAAGGTTTGGTTTGGGAGCTTTTCGATTGCATCAAGTGGCTAAGTCGAGATAACAATCAACTGGCTAAAAACTATTTAAAAAAGCTATCAGAAAAACTGTGAATGTTTGTATAACAAAGCGTTCAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCTTTGATTTTATTGGTTTTTAGTGTGATGCGGTGAGTTGGTCGCTGCGTTGCTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGGTAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCAGTTGGAGAGTGTATGAAGTTGGTCGAAAGTCTTGAAGAGCTTCAAGCAAATATTTCTGAACTTGAAAGAATCAGAACTTCTGGTTCAAAGTCAGAGAGGGAAGAGTTCTTATCTTTAATAAAAAAAGGCACTTGCTTTGTGCCCTATATTTTTGCCGGTTCATTGTATTTTGCTCCTTCACGCTTCGTAGGATATATAGACAATTCTTTAGAAAAACATAAGAAAAACAGTAATAAAGATGGGCGGGTAACGAATAAAGCCATAGATCAAGTACTAGATACGGTAGCGTCGAGTAATTCTAGTCTTGAAAGTGCTTATGTTTCATACTGTAGCTCACTAGGCTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 634452-633170 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIH01000002.1 Vibrio metschnikovii strain NCTC8443, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 634451 32 100.0 33 ................................ CAGAAAGACAAAAGAAAGATAGTAAAAACTGTC 634386 32 100.0 34 ................................ TTGCCCAGCCAATAATTTCACTTGCCGCATCGTT 634320 32 100.0 33 ................................ GCTCGAGTCAGCTATAGACAACGCATCAGCCGC 634255 32 100.0 34 ................................ TCCGCAAGACTTTATGCCCAGCGATGAGACAGAA 634189 32 100.0 34 ................................ ACTATTGATGTCAGTTTCATAGCTCTTGGGTTTG 634123 32 100.0 34 ................................ AATCAGCCAATCTGGTATATCCAGTTCCATTAAA 634057 32 100.0 37 ................................ TTGTTGAGATATGGGCGGGTTTTGATTGAGTCAAAAG 633988 32 100.0 33 ................................ AGCTGCAAGACGTCTCTTATCGGCTAGCGATGG 633923 32 100.0 34 ................................ CCTTCAACACGCCAGAAGTTGCACCATCACGATG 633857 32 100.0 33 ................................ GACTGAATTTAGTTGCTGTTGGCCCTCTTTTTG 633792 32 100.0 35 ................................ ACTTTCAAATATCTGGTACTGGCTGTAAACACCTT 633725 32 100.0 35 ................................ GTAGTGCGATAGATACGGCAATCAGTGAAGGTAAA 633658 32 100.0 33 ................................ AAGTTATTAATATTGATTTTGATAATCAACGTC 633593 32 100.0 32 ................................ TCAGCGATTTGTATATCTTGGTTCATCAAATC 633529 32 100.0 33 ................................ TTTTACCTTTGGATTAGTTATGGATGCTATATT 633464 32 100.0 33 ................................ AAGTTATTAATATTGATTTTGATAATCAACGTC 633399 32 100.0 34 ................................ AAGTTAGTAAATAACGAGTTAGTTTTACCGACAG 633333 32 100.0 34 ................................ CTTGTTTATGAGCCCAAGGTTAGGACGATATCTG 633267 32 100.0 34 ................................ CAAGATTGTTGAAGATAGGTATGTCATTGCGCCC 633201 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 20 32 100.0 34 GTCGCGTCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : ATTTGTGATCAAAAAATAAGGAGAGTACGCCATGATGGTATTGGTCACCTACGATGTATCTTTTGCTAGTGAAGATGGACAAAAACGTCTCAGGCAATTAGCAAAAGTCTGCTTAGACTATGGTATGAGAGTGCAATATTCAGTGTTTGAATGTGAAATAGACTCAACACAATGGTTAGAATTTAAAGATAAACTTTTATCTATTTATGATCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGCGCGAAAGAAGCGATAGATATATTTAGAGATACCCTAATTTTATAATCGCTAGGTTGGAGTGCTCACTAAAACATTGGGGAGCTAGCGATTGCATAAGTTCTTTAAAAATATAGAAAATGTTTATTTTTATAGCTTTACACAAAATAGTTTTCTTCTACCGCGTAAAGTTAGCGGCAAACCATAATATATGCTAGTTTACACGTGCCTTTCACAATAGGCA # Right flank : ACCATTACTGATAACTCGTATCTTTCTGACAAAAGTCCCACCTCACAAGAACATAGTGAAACTCGACTCGCTTAGGTCGACAGTTTGCTGTTACGGCAGCAAATTACCGGGCTTCACTTAACGCTCAACCATACTTTCTTTAAGCTGTTGCCTTGTATCCGGTTTTAGATAACTCATCATAATAAAACTGAGTAATCCACACAGTAGGGTCGGGACGATGGGATGGATGCCCGCTAAATCAGGTTTTAACCACATTAAACTCGTGTAGGTGGAAAGCCCAACGATCATTGAACTCAATGCGCCTGTCGATGAAGACTTTTTCCAATATAAACCGAGCACCAAAGGCCAGAGAAATACCGCTTGTAAGCCTCCGAGTGCCATTAAGTTAAGCCAGACAATCATCTCCGGTGGATTGGTTGCAGCAAAAAAAACTAACAAAGCAAAAATCATCGTCACCCACAAAGATAAGCGAGTCATCTTACTTTCTGCCTGCGGCTCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //