Array 1 947563-949116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZR010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA15 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 947563 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 947624 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 947685 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 947746 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 947807 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 947868 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 947929 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 947990 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 948051 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 948112 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 948173 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 948234 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 948295 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 948356 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 948417 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 948478 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 948539 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 948601 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 948662 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 948723 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 948784 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 948845 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 948906 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 948967 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 949028 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 949089 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 965249-966725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZR010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA15 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 965249 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 965310 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 965372 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 965433 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 965494 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 965555 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 965616 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 965677 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 965738 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 965799 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 965860 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 965921 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 965982 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 966044 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 966105 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [966147] 966147 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 966208 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 966269 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 966330 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 966391 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 966452 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 966513 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 966574 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 966635 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 966696 29 96.6 0 A............................ | A [966722] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //