Array 1 476799-478878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUJ010000004.1 Listeria innocua strain FSL L7-1067 NODE_4_length_484253_cov_84.851060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 476799 36 100.0 30 .................................... ATGTTACGGGTGAGATACCGGCGCGTGCTG 476865 36 100.0 30 .................................... TGATATTTTTCTTAGCGCATAGCTTGTACT 476931 36 100.0 30 .................................... AAGAAGAAAATCCAAGGAGAAATAAATACT 476997 36 100.0 30 .................................... AAAGTAGGGCAAGATAATATCACTACTTTA 477063 36 100.0 30 .................................... TTTTAGGTCGTCTGTGTTTTTTGCCGATAC 477129 36 100.0 30 .................................... GCGCTCTGTTTTAGATTGATCGTTGGAGGT 477195 36 100.0 30 .................................... ACCACTTTCTACTATAGAAAGCAAACCACT 477261 36 100.0 30 .................................... AGGATTTTTGGAATTGTGGTATACAGAGGA 477327 36 100.0 30 .................................... ACTAGTATCTTCGTGGGATTTGAAGAACAA 477393 36 100.0 30 .................................... ATATGAGGTTATTAGCTGGGACTTATATAA 477459 36 100.0 29 .................................... TTACCTTAGAAACCCCCTGACCGTCATTA 477524 36 100.0 30 .................................... GTAACAGATAGTGTGATAAGTGTCAAGCTT 477590 36 100.0 30 .................................... TGCAAAGGGAATATTTAAAAGGTTTAGGCT 477656 36 100.0 30 .................................... AATAAAATCGTTGATGGTGCAAAATCAGCA 477722 36 100.0 30 .................................... CTCTTTTTTGAACCAGTGGTAAGGACTGTC 477788 36 100.0 30 .................................... CTACTTTTCCGGATGTTGCATATTTGAATA 477854 36 100.0 30 .................................... GTGAATACTGCGGGCATGTATATACAGATG 477920 36 100.0 30 .................................... GTTGTTAGTAATCTTATATCAAATGTAGAA 477986 36 100.0 30 .................................... CGCTCGGAATTACAGTATACGAAAATGGAA 478052 36 100.0 30 .................................... AATATTTCGAAAGTCAAAATAGACTAGTTA 478118 36 100.0 30 .................................... AAAAGAAATTACCGATATGGGTCTCCGCTT 478184 36 100.0 30 .................................... AGGATTTTTGGAATTGTGGTATACAGAGGA 478250 36 100.0 30 .................................... ACCGTCAAGCGTGGTGCTTACAAAATGTAG 478316 36 100.0 30 .................................... AAAGGGCGAGGTGTTTAACACATGGCTCTT 478382 36 100.0 30 .................................... TGGTAGTTTGCCAATATATAATGTGAAATT 478448 36 100.0 30 .................................... AATATGTAGCTTTTCTAAAAAGTTTCTCGG 478514 36 100.0 30 .................................... TACACATTATTCCAAACTCCTTCCGCACAT 478580 36 100.0 30 .................................... CGGTATTGAAGATGAGCGAATGAGTGAATA 478646 36 100.0 30 .................................... TTCATCACCGAAAATTACACTTCGGTACAT 478712 36 100.0 30 .................................... AATGCTTTTTGAGATTCTTTTACACTTTTG 478778 36 100.0 30 .................................... AGAGAGGGTGAACTCTAAATAATCGGAAAT 478844 35 88.9 0 ....................C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACTGCGACGATTAGTGAGCTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACGGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACAAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGCAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAAATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CCATCTCTCAATCCACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAAGGACTCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACACACGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGTAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTCCCTCTGACGAATAAAACAGAATTAACCATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 563266-561942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUJ010000001.1 Listeria innocua strain FSL L7-1067 NODE_1_length_851441_cov_74.817829, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 563265 29 96.6 37 A............................ TTCAATCGTAACGCTTGGCATTGCGGAGATGGTGGAA 563199 29 96.6 36 A............................ TTTTCTCGCGACTTCAAGAACTGAACTCAGTGCATA 563134 29 96.6 34 A............................ AATCCAAATTGAATATCGCAATCAAATTCTTTTA 563071 29 96.6 35 A............................ ATAATATGAGGTGAGTTCAAGAAGGAGGTAACTAT 563007 29 96.6 36 A............................ CCTTTTTGGTATTTATTTGTGAGTGACTTCTCAGCA 562942 29 96.6 35 A............................ ATTGAAACGCTTATTAAGATGAAATACGGCTACGA 562878 29 100.0 34 ............................. AAAAGAGTTTAAAGATAACCTCGTTAAATTCTAT 562815 29 100.0 37 ............................. CCAAAAATATTGGGGTGTTTAGCAAGTTGTAAGACGC 562749 29 100.0 37 ............................. AATTGGGTATATAGCGATGCTGTAAAGGCATTTTCAG 562683 29 100.0 37 ............................. AAAACCGCATGGGGAATCGATGGTAAATTTGTTGCCG 562617 29 100.0 37 ............................. TAGAATCACGTCGGAACGTGTTGATTAAGGATGTTGT 562551 29 100.0 35 ............................. AAGATAAAGCGATTTAACTTCGTGGTCTTTTTTGC 562487 29 100.0 36 ............................. AATGACCCGAGAAGCAAGTTAAACACTTGCGCGGAT 562422 29 100.0 36 ............................. TAGTTCGTAGTTCTCTTTTTTCATCGGTCGTTAAAA 562357 29 100.0 38 ............................. TCTTTAATTTTGAGCTGTCCCAAGTATACGTTTGTGTT 562290 29 100.0 34 ............................. CAGATTGAAGCACTTGGCTTGAGTTTTGCAGATG 562227 29 100.0 35 ............................. TTTACAATAGTACTTGTAACTTCTCTAGTACTAAT 562163 29 100.0 35 ............................. AACTCTAACCAACCGTTTTTAGCCTTTTTTACCAT 562099 29 96.6 37 ............A................ TAAGCCCATCCGCTGTTGTCAATGCGCTTGCCTCTAA 562033 29 100.0 34 ............................. ATGCTTAGAAAGCCATCGCCGTAAAGTCGTTTAT 561970 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 98.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGCGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAATTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CCTAATACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCTGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACTACACAGCTTAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCCCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGGAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAACGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAAGTTAAAATAAATGCTAAAATGGTCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAGAGCTTGAAACGTTGACTTATTGGCGAAATCTCCGTAATATCAAACGTAGACTACTTAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.71%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 576793-576570 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUJ010000001.1 Listeria innocua strain FSL L7-1067 NODE_1_length_851441_cov_74.817829, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 576792 29 96.6 36 .G........................... AACACAAGATACCTTAGTGAGTTTAAACAAGCAGAA 576727 29 96.6 36 .........G................... ATTAAAACGCCTCTGCCGGGTCTGTTTCTGGAACTT 576662 29 100.0 35 ............................. AGATACATCCAGCGGTAATAATCGAGGTCATTCTT 576598 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 97.4 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : ACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTTATTACATCGGATTCCATCGACCTTCCTGAAGAAAAACAATTCGAAAAACTAACCACGATCTCCATTGGACGAATCTTAGGCCGAGCAATCGAAGGCGTACAAGAAAACCGTTCATTGCATCCGTTGTTTTAAGATATAAGCAGAAGACAGCTACTAGTAGAGTTGCTGTTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAACGTAAAAAACACCGAAGACCGACAGAAAGTTGTGAATGCTTGGAGGAAGTGGAGTTTAGAGATATTTGCTTTAAAAATGTATGCTGGTAAAAGTAGATTTTATCTGATTTGGAACAGGTCGACAGGAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCAC # Right flank : GTAGGAAGCGGCTTTAAAGAAATTATTAAATAATCTGGAGGACATTTTCATGAAAAAAGTTCTAATGCCACTTGTGCTTCTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGGAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCTAACAGTGATTCTATTGTTAAAGTGAAATTTTTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTGAAAAACTATAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCCGAACCATGGTATTTAAGTGATGATAAATATGTCGCAGTTGAAAACTATATTGCGCTTGAAAAAAATAAAGAATATACCTTGTTTCTAAACGAGAGCGACGATAAAATAAGTTCTATAGTTAGCATGGGTTACGGTAAATTCAGTGAAAAGCTCCAAGGAA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //