Array 1 71246-67873 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDED01000021.1 Xanthomonas cucurbitae strain CFBP2542 Xcu-CFBP2542-G1021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 71245 31 100.0 34 ............................... ATCGCCCGCGACCTCGATTTCCGGAGCGTCTATG 71180 31 100.0 35 ............................... GTGGGGTAGCGGCACACCTGTGTGATCCGTTGCAG 71114 31 100.0 34 ............................... TTGCTAAGGATGGTGGTACCAACGCGGATGTTCG 71049 31 100.0 34 ............................... GTGGTACATCTGCTTGCTGTTGGTGGCCCCGGAC 70984 31 100.0 35 ............................... TTGGCTATCCGTAGCACCACGACCAACCCCTTGTC 70918 31 100.0 35 ............................... CTAGAGTGATACGCGAATTCAGGACTCCCAAGAAA 70852 31 100.0 35 ............................... AAGCAGAAGATTAGGCTATTTGCTAAGACAGCTAG 70786 31 100.0 36 ............................... GCGTGAATGGCTGGAGGCAAGGTGCGGCCGCATCAC 70719 31 100.0 36 ............................... ACTGCATCGCGCCACGCGATCATGGCCAGTGCCTCG 70652 31 100.0 34 ............................... CAGAACAAGCGGGTGCTGATTGATCGAGGATGCG 70587 31 100.0 36 ............................... CCGACAGACCGCTCCGCTATGAAAAGTCCGTGACGG 70520 31 100.0 34 ............................... ATGATGAACTCCTTGAGGGTGATTGCCGCAAGCG 70455 31 100.0 34 ............................... CCGCTTAGCGGCCTTTGCGGCCTTGGCCCGGCGC 70390 31 100.0 36 ............................... AAGAGTATCAGCGAGAGGCAAAGCGCATGGAGGCAG 70323 31 100.0 33 ............................... CGTGATCCGGCGATAGTTGCGCGAAGTCATCTT 70259 31 100.0 35 ............................... TGAAGTGGGAAAACGTGACTTGGAACGGCCGCCAG 70193 31 100.0 35 ............................... TGGATGCTCAGGCCCTGGCGGATGAAGCCGCCGCA 70127 31 100.0 35 ............................... TGCGCAGCTTCGGGGTAGTCGAGGGCGAGCAGATC 70061 31 100.0 36 ............................... ACGAATTCCGCCGGCTCAAGCACAAGCATATGCAGC 69994 31 100.0 33 ............................... ATAAGCTCACGCAGGACAGGCTCTCCCTCTTCT 69930 31 100.0 35 ............................... TCTCCATGAGAATCTATTGACGAGCACTAACGCTC 69864 31 100.0 34 ............................... CAACAGTCCGCCCTCGAATGTCCGCACGCCCTTG 69799 31 100.0 35 ............................... AGGTAGTGATGATGAGGGAGCATTGTCGGCAGAAG 69733 31 100.0 34 ............................... CAGATCACCGACGCGCCACGCACCGGAGTACCGG 69668 31 100.0 35 ............................... AGTGGCGATCTTGAGCCGCGGAAAGATGTGCGCAC 69602 31 100.0 34 ............................... AGCACGCAATGCGCGCTCTTGCCAATGATCGATC 69537 31 100.0 36 ............................... GATGAGGGGTTCGACCTGGCAGCCATCGCCGGCAGG 69470 31 100.0 34 ............................... AATGCAGCTCGACATCTTTGCGGCGCCCGCTGGC 69405 31 100.0 34 ............................... CTGTTCGATCGCATCGGTACGTCGGTGCAGAAAT 69340 31 100.0 35 ............................... CATATCCCCGGCGTCCACCGGGGTCCACTCCTCGG 69274 31 100.0 34 ............................... TGGATCGTGTCGGCGGTGCGGCATGACCGCCGCC 69209 31 100.0 35 ............................... AGCAGCGTGGGCACGACCACGCCCACGCCCTTACC 69143 31 100.0 34 ............................... TTGTCCAGGGCGGCGAGCTTGCCGGTGAGTCCGG 69078 31 100.0 34 ............................... ATGCACTGCGCTCCTGGTGGAAGTCACTTGCGTG 69013 31 100.0 33 ............................... ATGGCCTTGCGCCCGATCTTGCGGCACGCCACC 68949 31 100.0 34 ............................... TCGCCCTTGATGTCGTTGACCACCACGCTGGCCT 68884 31 100.0 34 ............................... CGGCTTACATCCCCAATAGCCGGGACGAATCATG 68819 31 100.0 34 ............................... TGTTGTTCTGTGGATTCATGGGCGCGCTGTGCGG 68754 31 100.0 35 ............................... CGACTAGTGCCCTGACTGATACCATCAGGGAATAA 68688 31 100.0 34 ............................... AAAGCAAAACCACCAAGAGATTATCGCCATGAAT 68623 31 100.0 35 ............................... GATAGTCATGCGCTTTTGACTCCCAGCTTGTGCAA 68557 31 100.0 33 ............................... ACTGCCTGCGCGCCGAGTGACTGGAGCCCGTGG 68493 31 100.0 34 ............................... TCGTTAACCGAATCCCGCAGTTTGTAGAACTCCT 68428 31 100.0 35 ............................... TCAGTATCGCCAGTGCCGGCGCAGTCAGCGGTATT 68362 31 100.0 35 ............................... GGGATCACAACGCCGAACTCAGGGCGCAGGACCGC 68296 31 100.0 34 ............................... ACGGCGCGGGTGAGGCAGGTGAGGCGTATGCGTA 68231 31 100.0 35 ............................... ATTGCTGCGCCGGCGCCCATGTTGGGAACGACCCG 68165 31 100.0 35 ............................... CAAACCAAGGCGTTCCACCTCGGCCTGCGCCTGGC 68099 31 100.0 34 ............................... AAATCACCCTTGCGACCCCGGCCAGCATCGGCGG 68034 31 100.0 35 ............................... TACAACGCCCTGATCGCATCGGTGGAACGGATTTT 67968 31 100.0 34 ............................... AGCATCACGGCGTACGACCAGGGCGAGTGTTGGC 67903 31 83.9 0 .........C...C...A.T.......G... | ========== ====== ====== ====== =============================== ==================================== ================== 52 31 99.7 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GAAGTGAAGGGGAATTGCATCATGATGGTTTTAGTCAGTTACGATGTCAGCACCAGCTCCTTCGGCGGTGAAAAACGGTTACGCAAGGTCGCCAAGGCCTGCCGCGACCTTGGCCAACGGGTGCAGTTCTCTGTCTTCGAAATCGAAGTGGAGCCAGCGCAGTGGACGCAATTGCGGCAACGTCTGTGCGACCTGATAGATCCTACGGTAGATAGCCTGCGCTTCTATCACCTTGGCGCCAAATGGGAAGCGCGCGTCGAACATATCGGGGCAAAGCCCAGTCTGGACCTGAAGGGGCCACTGATCTTCTGATGCGAACCCCAAGCGTCCTGCAAATACCCAGCAGACTCGCGCTCCCCCTAAGCAATTGATCCATAAGAATAAATTTATATTTTTGCAAAAATACTGAGAGAAATTCGGCTTCCTCGTGTCCGCTCGTCAAGAGGTTCGCGGAAAGCCCAGTTTTTTTGTAGTTCTGGCAAACCCTTTATGCTAGGGCA # Right flank : ACCGTGAATCTACCTATACCCGGTAATGACTCGGTGGATCTGCTAGCCGCCCCTATTGTCCGATCAGAAAGACCGCATAGATGTTTTCGGTGAGGATCATGCTACCGGCTTCGAGCGATTCGACGATTGCACCGCCATCGGCAGCCGGCATAGGTGGCGCCGGCTGCCCAGAAACGACGATGGCCTCCATCGGCCAACTCCCCGCCTGGACACCATAGGCAAAGCTCGGCGCGACGTCGGAAATCGTGTAAAGCCCCTGAATTCTGACGCCATACGCCTTGGCAAGCTCAGCGGCAACGTTACGCGACTGGGCTGCAGCCTCACGCTTGAGCTGTACCCGTACCTCGGCGTCCTTGCTGTAGAACGTCTTGATCCCCGATAGCTGCATTTCGTTGGACGTCTTCAGTTTGCCGAGAAACTGCCTTGCATCATCAAGCGACTGGAAGGCCGCGCCAATGCTGCGCTTGACTTCAGTGCCTTCGAACTTCTGCGCTTCGTTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 121-2189 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDED01000027.1 Xanthomonas cucurbitae strain CFBP2542 Xcu-CFBP2542-G1027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 121 28 100.0 32 ............................ TACCTCGCGCGCGAGCGGGACAAGGGCGGCGA 181 28 100.0 32 ............................ AGTATCGAGGACAGCGAACACGCGACGGCGCC 241 28 100.0 32 ............................ TGGTATACGGCCATAGCGCCGGTCTGCTTTGC 301 28 100.0 32 ............................ CGAAGGGGCGCAGCATCGCATCGGCAGTGTGG 361 28 100.0 33 ............................ CTCACGGACGGTCGGCAGCGCCTTCTCCCACGC 422 28 100.0 32 ............................ TCATGAGGGTGACGTGCCGTGCCCCGAGCTCG 482 28 100.0 32 ............................ TGGATCGGGCCACGGCCTCGATAGCGGTGGCC 542 28 100.0 32 ............................ TAAGCGGGATATCGGCATACATGTCGAATCTT 602 28 100.0 32 ............................ GACACACCGCTCGAAGGCGAGGAAACCAAGTC 662 28 100.0 32 ............................ AATCGATTCAGATGCCGCCAGCTGCAAAAGTC 722 28 100.0 32 ............................ TCACAGTCGAGCTTGGAACTGTATTTTGCAGC 782 28 100.0 32 ............................ CATGGATTCATCCTGCCAGGTGACGTGCCCGC 842 28 100.0 32 ............................ TAGGCAACGCGGCATACGCGAGTCGTTTGGGC 902 28 100.0 32 ............................ ACCACTCTCCAACGGGTTTGGCGGCGGGTTGG 962 28 100.0 32 ............................ GACCACCGCCGCCATGAGCGCGCGTGTCGGGC 1022 28 100.0 32 ............................ TGCACGACCACATGCGCGCCGCGCACGCCATC 1082 28 100.0 32 ............................ ATCATGCCCTGCACTGGCCTGGTCGGAATCGG 1142 28 100.0 32 ............................ TTGAGACCGCCCGCTTATCGCGCTCGGTCGCA 1202 28 100.0 32 ............................ GACGACCAGCTCCGCGCCTGCCAAGCCGTGGT 1262 28 100.0 32 ............................ ATGAGCGAGCCGGCAGTGATTGGCCGCCAGGT 1322 28 100.0 32 ............................ CACCGAAGTTGGTGCCGGTCTTCACCGGAGAG 1382 28 96.4 32 ..........T................. AAATGAGCGCGGCGATGATGGCGATCAGGATG 1442 28 100.0 32 ............................ TGGTCAACTTGACCGGCATCGTCGGCGGCTAC 1502 28 100.0 32 ............................ TTACGGATATCTCTCGCGGTCGCTGCATCGGC 1562 28 100.0 32 ............................ GGGCCAATCTGTTCGCAGCGGAGAGGCGCTGT 1622 28 100.0 32 ............................ ACGGCGTGCGGCCGACCACAGGTCCGTAGCGT 1682 28 100.0 32 ............................ AAGAGCCTGACTGCGCCGCGCCTGACGCTGGC 1742 28 100.0 32 ............................ TGGAAGCGCGCGACCGAGCAGAACGCGCATGA 1802 28 100.0 32 ............................ TTTTCGCGCTCACGCTGGACAGTCTGGCTGAC 1862 28 100.0 32 ............................ TAGCGACCGAATCGGGGGATAAATGCGGAATG 1922 28 100.0 32 ............................ TGCTGCTCCACCGGCGCCTGCGACTGCCGAAC 1982 28 100.0 32 ............................ GTCAATGGACGCTGATGCCGAGCACCTTAAGC 2042 28 100.0 32 ............................ ACTCGCGAAGCAACGATTGCTGGCGGATTTGA 2102 28 100.0 32 ............................ AACGAGCGCAGGGACCAAATCAACGGGATGGG 2162 28 89.3 0 ...................A...G...T | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.6 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CTGGGACGGTGGAAAGGGCCTGTTTCCAAGGCTCAACGCAGATTCAGGGGCCTCAAGGCACCCACACGAATCCGCGATGAGCCAGAAAAAAAAAGACTCTGCCGGCATTGCGCGAGCCATG # Right flank : TGCCGAAAAGCGGGCAGCCACCTCTGCAGCCATGGATTCCGAACGCAACGAGTCAATCGGCTTGCACGAGAACCAGCTGCCTTGTGGCAGCCGGTTCATCCGGCTCAGCTCCGCGGCTTGCGTTTTGGACGCGCGGCCGCTGACGTCTGCGCTTCGATCCGGTCGCCGACCGCCTTTCGCGTTGTCTTCGCAATTTTTCTGGTCGCCGGCTTGACCACCGCTTTCGCAACCTTGCCTTTTAATGCAGCAGACGCTTGCGTGCTTTTCTTCGTAGCTGTAGATGCACGGCTTGCGGTTGGAGGGGTGGCCCTCTTTGCCGCGCTTTTACGCGTCTTCCCGGCTGGCGTCATGGCACTGGTGCGCACTTCCGGTGGGCGGCGCGGGGGTGGCTTGCGGCCGGGGGTGAGTGCCCGCCAGGCATGGCCGCCGTTCATGGCCAGCAATGCGTCGGCGGCCGAGGGGCCGGCGCTGCCGGCGGCGTAGTTGGGGAAGTCGCTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 116-3867 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDED01000078.1 Xanthomonas cucurbitae strain CFBP2542 Xcu-CFBP2542-G1078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 116 28 100.0 32 ............................ AATCGGCGAAGCGCTGTTTCTGCTGCGGCTGC 176 28 100.0 32 ............................ GAATTTGAGGCGTGCGCAAAACAGGCGGGAAT 236 28 100.0 32 ............................ ACCACGCAGCACTGCGCAGGCGCTACGCCAAC 296 28 100.0 32 ............................ AACCAGCCGGTGACGATGTTGGATGCGCTGAA 356 28 100.0 32 ............................ GGCCGGTTTCTTGGCCGGCTTGGCGGGTTTGC 416 28 100.0 32 ............................ CGGTGAGATAGTGCCGCAGTGGGAGATTTATT 476 28 100.0 32 ............................ AACCGCACTAGGAGTACGAAATGAAATACGCA 536 28 100.0 32 ............................ AGCGGATGGGATGTGGTGAGCTCATCCAGCCA 596 28 100.0 32 ............................ CTGGTCGTCCACTCAGGCGACGACTTGTTAGG 656 28 100.0 32 ............................ ATCCGGTGTGTGCGGCTAGAGCCAGAACCCCC 716 28 100.0 32 ............................ TGATACGGCGCCAGGCGACGGCCTTCGAAACC 776 28 100.0 32 ............................ ACATTGAGGCTGGGAAGACCTACCAGGACTGT 836 28 100.0 32 ............................ ATGACCGTTGCGCGCAAGCGGTCGGCGACGCC 896 28 100.0 32 ............................ TGAAGAATCTGTTCCGAAAAAACTTTGTGAGC 956 28 100.0 32 ............................ TGGTGGACCCGCGCTCACTGAAGGTGGATTCC 1016 28 100.0 32 ............................ AGCAGCTTGAGTCGCGTTTCGATCTGCAACTT 1076 28 100.0 32 ............................ CGAAGCACTTCCCACGACTGGTAGTTTCCGAG 1136 28 100.0 32 ............................ TCTTGAAACCAGTCCTTCGTCACCTCATCGCA 1196 28 100.0 32 ............................ AGAGCGGGAGGCTGCATGAGCTGGGGCGCACG 1256 28 100.0 32 ............................ ATTGCCCAAGCGACTCGCGTATGCCGCGTTGC 1316 28 100.0 32 ............................ TGGAAAGGCAGCCCGAGATGCTCGAGCAGCCA 1376 28 100.0 32 ............................ TATCAGAAGTTGGTGGGATCGTTCGGGATCAC 1436 28 100.0 32 ............................ ACCGCAAGTTGCAGATCGACACCCGCCTCAAG 1496 28 100.0 32 ............................ TACAAGGGCTGCAGCTTTAGCGCCGCTTACTC 1556 28 100.0 32 ............................ AACGCGACGGCCAACAATGCCTACCAGGGCGC 1616 28 100.0 32 ............................ ACGACCTCCGCCCGGACGTCTTCGGCCCGGCC 1676 28 100.0 32 ............................ GTGCACGTCCAGATTGAGATCTCCGCGCTCAA 1736 28 96.4 32 ..................C......... CCCAAGAAGCGGAAGAGGGGCGCGTGATGAGC 1796 28 100.0 32 ............................ ATCACAACATCCGTTGCTATCTTCCCAAGATG 1856 28 100.0 32 ............................ ATGATCGGCGCAAGCTCAGCCTGGTCATAGGA 1916 28 100.0 32 ............................ TTATGAGCGTGACATCCCGTGCCCGGATCTCG 1976 28 100.0 32 ............................ ACCGCGCCCGCAGTGACGTCCTGCTGCTGCCG 2036 28 100.0 32 ............................ CAATAGCCGCCGCGATTACGGCAGTTGCCACC 2096 28 100.0 32 ............................ AAGCCCACCAACGGCGGCCGCGTCACCACCAG 2156 28 100.0 32 ............................ ACCAGCGAAGGAGACGGCTGGCGCTGCGGAGT 2216 28 100.0 32 ............................ CCAAACCCGTGGGCTGTCCGGCAACGAGGCAA 2276 28 100.0 32 ............................ ACCATGCAAACCCGCTTTTTACGGGTCGTTCT 2336 28 100.0 33 ............................ CGGCCAACGCTGCGTAGGCCGCCAGGTCCACAT 2397 28 100.0 33 ............................ AACACGCAACGTTGGGCTATGGCTCAGGGATAC 2458 28 100.0 32 ............................ AGTTCAGCCAGCTGCATGAACACGCCCGTGCG 2518 28 100.0 32 ............................ ACTACGGCGGCTGGCGCCGACATCGAAGACCT 2578 28 100.0 32 ............................ AGACGGCCAAATGACATCGACGGCGCCGGACG 2638 28 100.0 32 ............................ AACCAGGGCGCCGACGAACTTCAGCGCGGCGT 2698 28 100.0 32 ............................ CAATCGGCGACCTCGGCTTCCACGCCCTCGAC 2758 28 100.0 32 ............................ TGATCGGCGGCTCACGCCTGGCACACCAGTTT 2818 28 100.0 33 ............................ ATCACCGAGCGCGTCAATGGCGCGCAGATCGGT 2879 28 100.0 32 ............................ ATTCGGGGAAAGCGTCTGTAATTCTGGAAACT 2939 28 100.0 32 ............................ TCGTCGCCATTACCCAAGCGACTCGCGTATGC 2999 28 100.0 32 ............................ AGCACCTCAATGAAGGTAGACCGCTCGTAGTT 3059 28 100.0 32 ............................ CGGTTGAACAGGCGGACCAGCGTGGAGTTGGC 3119 28 100.0 32 ............................ TTCGTCCAGCGGCTCACCGCTGATGCGCTCGA 3179 28 100.0 33 ............................ CTCTTCCAGACCTGGCGAGTCCAGCGATTTGAT 3240 28 100.0 32 ............................ TGGAAATCACGGGCATCGGTGCCGGGGGTGTA 3300 28 100.0 32 ............................ TCAGTGATTGCAGCTTGGGGCACGGGTAGAAT 3360 28 100.0 32 ............................ CTTGGCAACGCGGCATACGCGAGTCGTTTGGG 3420 28 100.0 32 ............................ ACAACACATATGCCGTCCAGTTAATGCGAGCC 3480 28 100.0 32 ............................ TGGACGCGCTCTGGCACCAGGCCGGTGCGGCG 3540 28 100.0 32 ............................ TTGGCCGTAGCTCAGACGGCCACCATGGCCAT 3600 28 96.4 32 ...............A............ ATGCCAGCCTGTTCTGCAGCCAGCCAGGTCAC 3660 28 100.0 32 ............................ TGGTCGGAATCGGCATCCGCCTGTGGCTCCCC 3720 28 100.0 32 ............................ GGCAGCGTCGCGGGTATGTTCAATGACCGGTA 3780 28 100.0 32 ............................ CCAAGGCTCGTTAACCGCCTTGATCGCCTCAA 3840 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 63 28 99.9 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TGAAAACGGCGAAAATCGAGGGTCTGAACGAGTTTTACGCGACCCAGGACGGCTTTTTCCGTCTCCTGGCTGCGTTGATCAGACAATCCTTAATGCGAGCGTGCTATGAGCAGGCG # Right flank : GCCCACGTCGTGCCGAGTGTCGCGGCGGCAGGGGGTGGATTCACTCACGAAGTGCAAGGGTATCGTAGTTGAAAAAGACCTCGGCTGGAGTGAGATAGCTCAATCGTTTTCTGGGTCGGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2832-99 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDED01000010.1 Xanthomonas cucurbitae strain CFBP2542 Xcu-CFBP2542-G1010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2831 28 100.0 32 ............................ ACTTACACACGTAATGCAACAACCTTCGTCAC 2771 28 100.0 32 ............................ GGCTCGATCTCGGCGACACCGGCGCAGCTCCA 2711 28 100.0 33 ............................ CGCGTGGCCGCCGTCCGCGAGGGCGAATGGATT 2650 28 100.0 32 ............................ GACTGTAGACGCATGGGTGCGAAACGGTTGCC 2590 28 100.0 32 ............................ ATGAGTGATTCGATCATGGCTTCGTGCGACAT 2530 28 100.0 32 ............................ CGGGGAAATCTGATTTTACTTTCCACTCTGAT 2470 28 100.0 32 ............................ AAACTCGGTAGCCTGACCCTTCCTTCCGCACT 2410 28 100.0 33 ............................ AGTGGAGTCTACGCCTGCGCCCGAGTGGTTCGC 2349 28 100.0 32 ............................ TTTTACGGACCCAATGCTGCCTGTACCGCGCA 2289 28 100.0 32 ............................ GGACGCAGCGCTGGAGAATGGCGGAGAGCCGG 2229 28 100.0 32 ............................ TGGTCGGCGAGGGCAGCTTTACGGGAGTAAGC 2169 28 100.0 32 ............................ ATACAGCCCGTTCATGGCTCCAGCAGAATCGA 2109 28 100.0 32 ............................ ATGCCGCGCACCAGGTTCAGCGCCGTCGCTGG 2049 28 100.0 32 ............................ AGACCTTCATGCGCTCGGCATTGCGAGAGCGC 1989 28 100.0 32 ............................ ATCAGGAAAACTCCGAGGAAAAGTTGAGGCGC 1929 28 100.0 32 ............................ CCAGACCGGCACCAGTGGGATGAAACGACCCG 1869 28 100.0 32 ............................ GATGCCGGGCCGGTATCCCCAAGATGATGTTG 1809 28 100.0 32 ............................ AGCAGCATGTGCTTGGCGGCGGCCTCGTGCTC 1749 28 100.0 32 ............................ TTATGCAGCTGCTCTTTGTCCACGCCGGCCCG 1689 28 100.0 32 ............................ CTTACCGGCTCCGACCTTTACACCGGGCATCC 1629 28 100.0 33 ............................ CTGGATACCGGCGGCACAAGCGGGTACACGCAG 1568 28 100.0 32 ............................ GAGCCGGCCGCTGCCCCCGAACCTGAAGTGTC 1508 28 100.0 32 ............................ TGATGGAAATCAGCACGCCGACGCTGAAGGGT 1448 28 100.0 32 ............................ GGCAGGGATGCGAAGGTTGCTTTCCGCCCACT 1388 28 100.0 32 ............................ GCTTGCTACCATGCGCCTTGCCTGCAAGCTAA 1328 28 100.0 32 ............................ GACCCGTTCAGCGGGAACATGACTTGCGTCGA 1268 28 100.0 32 ............................ GGGTCCACATGCGTGTATCCGCGCATCCTGCA 1208 28 100.0 32 ............................ GTCAACAAGCTGCGACAGGCCATGAAGCAGAT 1148 28 100.0 32 ............................ GAGAACCAGCAGGCCGAGAACCTATCCAGCAT 1088 28 100.0 32 ............................ AAGCCCGCCGGAAGCGGATGAGGCGATCATGT 1028 28 100.0 32 ............................ CCCCACCGTCTCCACGATATCCCCATTCTCAT 968 28 100.0 32 ............................ ATTAGCGGATTCCTCGCTCAAGCACGCGATGC 908 28 100.0 32 ............................ GAAGCGCGAAAGATCGAAGCCGGCGGCCGTCG 848 28 100.0 32 ............................ CCAAAGGACGCACCCGCTATGTCGCAGGAACC 788 28 100.0 32 ............................ CTCCCAGCAAAAATGCAGCATCATTCAAAATC 728 28 100.0 32 ............................ ATCGCAAGCGGCCTGCTCATAGCACGCTCGCA 668 28 100.0 32 ............................ AATCCAAAGGAAGCTAACAATGTCCTACCTCA 608 28 100.0 32 ............................ TTTGTGAAGTACTCGGCAATCATCCCCTTCAG 548 28 100.0 32 ............................ GCTGCGGTGGCCTTGATCCGTGCGCCGCGAAC 488 28 100.0 32 ............................ ATCACTTAATAGCGATACGAATGTTCCAAATA 428 28 100.0 32 ............................ TTAACGGCCACCTCATCGCCCTTATATCGAGA 368 28 100.0 33 ............................ CTAAATTTAGGCGCATGGGATAGCCATCCGGGC 307 28 100.0 33 ............................ AACACACGAAAAATATCGTGGTGACTGGTTTCT 246 28 100.0 32 ............................ ATCCGGGCTGCCCGACCAACATGCACAATCCA 186 28 100.0 32 ............................ ACGGACGTTGCGGCGCTTGGCGAGTGCGCGAT 126 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 46 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CTTTGCAGACAGTGATGGCAAGTCCCTGGCTGCACGGCATGCGCGATCACCTGCTGGTCTCGAGTATCACTGCTGTTGCGGCCAGTCCCTCTTACCGGCAGGTCACACGGGTTCAGGCCAAAAGCAGCCCATCGCGCCTGCGACGTCGTGCCATGCGGCGTCACGGGATCGATGCCGAAACAGCGACCCAACGCATCCCGGACACGACAGCCGAACAGTTGTGGCTCCCGTTCGTGACGCTGGGCAGCCGTAGTACCGGCCAAGCATCATTCCCGCTCTTCATCTGCCATGGCCCCCTACTACCTAAACCCAAAGACGGCAGTTTCAGCAGCTATGGCCTGAGCCAGGAAGCGACCGTACCCTGGTTCTGACCCTTTTTTCGGTAAGCATGCGGCCTTCTTAAGAATCAGTCACTTAGCAGGCACCCTGAAGGAAAGGGTGCCTGCTCTTTTTCGTCAGTATTGTCTTATTTATCAATGCATTGAAGAGAACCTTCTCTT # Right flank : AATCCCGTTAAGGACGCTCTGAACAAAGCAGCCTGATCTGCGACAATTGACCGACGATCCAAGCGGACGATTTCGATGCAACTGAGCTTTGGCGACGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //