Array 1 53471-54902 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTRT01000014.1 Escherichia coli strain 8378wE5 NODE_14_length_174916_cov_32.4859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53471 29 100.0 32 ............................. AAATAGACGACCAGATAGCCGACCAGATTGGA 53532 29 100.0 32 ............................. TCTGTTAATCAGATTAAAGGTGCGGTAATTGA 53593 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 53654 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 53715 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 53776 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 53837 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 53898 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 53959 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 54020 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 54081 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 54142 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 54203 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 54264 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 54325 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 54386 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 54447 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 54508 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 54569 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 54630 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 54691 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 54752 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 54813 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 54874 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80602-81364 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTRT01000014.1 Escherichia coli strain 8378wE5 NODE_14_length_174916_cov_32.4859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 80602 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 80663 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 80724 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 80785 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 80846 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 80907 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 80968 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 81029 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 81090 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 81153 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 81214 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 81275 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 81336 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //