Array 1 50261-49511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYN010000007.1 Listeria booriae strain FSL L7-0217 NODE_7_length_119065_cov_45.741176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 50260 30 100.0 36 .............................. TTGTTCATTATTATCATACTCCCATTTATGTCTAGC 50194 30 100.0 37 .............................. GAACATACAATGTGCTGATTGAGGTTAAAACTATCGA 50127 30 100.0 35 .............................. AGCTTTACATCGGAAAACATTGCAGCCACTTCTCC 50062 30 100.0 35 .............................. ACAATTTGATTTTTCATTAATATTACCACCTTTAA 49997 30 100.0 35 .............................. AATACTGTTAATAAATAATCCGTGTTAAGACTTAG 49932 30 100.0 35 .............................. TTATTATAGGCACAATGGTAAAGATTTAAGCCGCA 49867 30 100.0 36 .............................. TGACATACTGCGCTTTTAATCGTTTAACGCTATCGC 49801 30 100.0 34 .............................. ATAATTGATTAGACCAATTACGCGTTTCGTTTGA 49737 30 100.0 35 .............................. CCTGCTATTTTCAAACGTACAGCTTCTTTAAGCAC 49672 30 100.0 35 .............................. CAAGATGCACAGTTAGCCCAACGCTTTGGCGATTT 49607 30 96.7 37 A............................. TAAACTGTCGCGCTGTGAATAGCGTTAGACCGTTTGT 49540 30 83.3 0 ....................C..CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 98.3 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGCACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATATGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGATATCGACAGATTTTGTTTTTACTTAGGGAGAGAATGGAGTAGGATGTTTTTCGAGGAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGAACTATCGGATTTAAAGACGACTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTTGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTGGTTACTTCAAAAAATGAATTACTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGCTCCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAACC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 93875-94885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYN010000002.1 Listeria booriae strain FSL L7-0217 NODE_2_length_624332_cov_44.274820, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 93875 30 100.0 35 .............................. ACCCCAATAACAAAAAGCTTTACTAAACTTTCTCT 93940 30 100.0 37 .............................. TCCGTATTGTCACAAACAGAAAACACATCATAAATAT 94007 30 100.0 36 .............................. TTTACAGTAGAACGTTATGAAGGCGCGTTTGAATTG 94073 30 100.0 36 .............................. AGATTTGCACGAGCATTTAGCAAAGGAAATGGCCCT 94139 30 100.0 34 .............................. ATGACTCCTTTTTTCTCTGTAAATATAAGACAGT 94203 30 100.0 36 .............................. AAATCAATTAGTTCTTTTTCTGATTCTTCTGGAACG 94269 30 100.0 37 .............................. ATATCACACGTTTTAATAAGTGGTTTAACGATACACC 94336 30 100.0 36 .............................. GGTGTATTCCCTTACCGCAGAGGTGATGGGGCTATG 94402 30 100.0 36 .............................. TGCGGATTCAAGGGACCTTATTGCTGAATCGCTTTT 94468 30 100.0 34 .............................. GAAGACATGTTGACAACAATTGACATTAAAAATA 94532 30 100.0 35 .............................. TCCTAATTCTCGTTCTTGATTTACATCTGTCATGT 94597 30 100.0 35 .............................. TTATAACCTTTAATACCGTACTTTGTTGCATATTT 94662 30 100.0 34 .............................. TTAGTCCAGTTAAATTCTTACTGTATGCGACACG 94726 30 100.0 34 .............................. TAATTATAGGAATCCGTTCTTTCGTTATGTCGAC 94790 30 100.0 37 .............................. ATCCATTTCATGTAATCCTTTGCTTTATCTGCCAATT 94857 29 80.0 0 ..C..............A..-...C..G.C | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 98.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATGAGGGGGCATCGACAGATTTTTGTTAAGCGCTGGTGTGACTGGATTTGAGACCGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : CTAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTACGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCAGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTGTTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 235946-234545 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYN010000001.1 Listeria booriae strain FSL L7-0217 NODE_1_length_1117631_cov_56.296239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 235945 30 100.0 34 .............................. AATTTTTTCCTGCTGTGCTCTATGCATAAGATGC 235881 30 100.0 36 .............................. TAAATTCGGACGTAAGAACCGCGACAAGGTGAAGCT 235815 30 100.0 36 .............................. CAATACCTATTCCTTGAAAACGTTAAGGGGCTACTC 235749 30 100.0 36 .............................. ACGACACCATTCACTTCTAACGCAACAATAGCAACA 235683 30 100.0 36 .............................. CCCTTCAAGCTGTCATCCGTTGCTTTAGCTAAGTCT 235617 30 100.0 36 .............................. GCAAATGAGGTTTGATTGGTGTAAATAGCGTGGCCA 235551 30 100.0 36 .............................. GACTATATAAAAGATCAAATGATAGATTCCCTTGAG 235485 30 100.0 37 .............................. ACGTAAGTTATCTCTGGACCGTTGGCGCCCAAAATAC 235418 30 100.0 35 .............................. GTGGCTGTGCCTCTGATTCTACAATGTCAAGGTTG 235353 30 100.0 35 .............................. TCAACATGTATGTCGCCTGTTTTATTAATTTGAGA 235288 30 96.7 34 .................G............ TAAACAAACAAAGGTCTCGTTTAAAAAATAATGG 235224 30 96.7 35 .................G............ AGGGCTAGCTCGGACACTTTGCCCTTTTGGCGTAA 235159 30 93.3 36 ............T....G............ GTGAAATTTGCCGTGACAGATAGCACAGTCAAAGAT 235093 30 93.3 36 ............T....G............ GTTCAAGTCGAAAAAGTTTCCCGCGATTACATCGTT 235027 30 93.3 36 ............T....G............ TACGTAGTCTCGCCCTCCCCGTCGCTCATACTCGTC 234961 30 93.3 35 ............T....G............ TCTGTTGCGCCGTATAAAGCAGAAATAAGTTGCCG 234896 30 93.3 35 ............T....G............ GCACCAGACATAGCTAGATTCTTGTATGGCGAAAC 234831 30 100.0 35 .............................. TATGTTTCATGTACTGCTCTGCAGCATGTAATACG 234766 30 100.0 37 .............................. ATGGGAACGACTATTATTCATGGCTATGTAAATGGTG 234699 30 93.3 37 T................G............ AAAATAGGATGACGGTAGATCAAGGCCAAATGGTAGA 234632 30 93.3 28 .................G......A..... TAGGAAAAGGGCGCACTTATACACCCTG Deletion [234575] 234574 30 73.3 0 C.....CC.G.....C.......CA...C. | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 96.4 35 GTTTTTATCTAAGTAATATGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACTCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAGTTAGGCCATTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TAGTTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGCGCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCATGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGTGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGTATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Alternate repeat : GTTTTTATCTAATTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //