Array 1 108326-104268 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWB01000001.1 Salmonella enterica subsp. enterica serovar Muenster strain BCW_2889 NODE_1_length_541624_cov_3.11265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108325 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 108264 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 108203 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 108142 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 108081 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 108020 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 107959 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 107898 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 107837 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 107776 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 107715 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 107654 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 107592 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 107531 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 107470 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 107409 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 107348 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 107287 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 107226 29 96.6 32 ............................T CGCCCACCCTGAGTATTATCACTACTCCGGAC 107165 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 107103 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 107042 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 106981 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 106920 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 106859 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 106798 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 106737 29 100.0 32 ............................. TATTTCACTGACTGACTACGGCGGATCGAGTA 106676 29 100.0 32 ............................. TCAGGAAACAGCGCAATATTGATTTACTCGCA 106615 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCGGAGATGGTG 106554 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 106493 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 106432 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 106371 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 106310 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 106248 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 106187 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 106126 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 106065 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 106004 29 100.0 32 ............................. CTGTTTTGTCTCACGCTGGCGACCTCCCTGGT 105943 29 100.0 32 ............................. GCGGGACCGGAGGCGCAAGTGGTGGCGCTTTA 105882 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 105821 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 105760 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 105699 29 100.0 32 ............................. GCGTTTGAATCCTCCTGGTGGCGTATGCAGGG 105638 29 96.6 32 ..........T.................. GCCCGAGACACCCGCGCGTTATTTTTGAACCT 105577 29 100.0 32 ............................. TTTGAACAGGCGCTGAACTGGGCTGATATCGC 105516 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 105455 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 105394 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 105333 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 105272 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 105211 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 105150 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 105088 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 105027 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 104966 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 104905 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 104844 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 104783 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 104722 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 104661 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 104600 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 104539 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 104478 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 104417 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 104356 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 104295 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 67 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125580-124881 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWB01000001.1 Salmonella enterica subsp. enterica serovar Muenster strain BCW_2889 NODE_1_length_541624_cov_3.11265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125579 29 100.0 32 ............................. CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC 125518 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 125457 29 96.6 32 ............T................ CCGAAATACGATGCCGGAATATCGTAAACGGA 125396 29 100.0 32 ............................. GGAGGACGCTACTATCGGATTCGCTCCGGGGA 125335 29 100.0 32 ............................. GATTTACTAAGGTCAACAAGGGATTGAATTGG 125274 29 100.0 32 ............................. CTCATGCGCAGCACTGGATCGAGAGCGAAGGG 125213 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 125152 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 125091 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 125030 29 96.6 32 ......G...................... GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT 124969 29 93.1 32 .....A......T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 124908 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //