Array 1 202914-204772 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOX01000002.1 Cronobacter sakazakii strain MOD1_LR713 LR713_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202914 29 100.0 32 ............................. AGATAACTTTTCCCTGCGCGTTCGTTAATTTC 202975 29 100.0 32 ............................. CCTGCCCGGTACTGATAGCGCCGCCACTCGCG 203036 29 100.0 32 ............................. ACGGGATAAATCCGTGTCCTCAACGCCTTTAA 203097 29 100.0 32 ............................. GTCAAAATGATGGGGGTAAATAGGAATAGTAT 203158 29 100.0 32 ............................. CGGGCCGAAACCCGCATTTTTACGCCAACTGA 203219 29 100.0 32 ............................. CCTCATCGATGGGCTGCCCAATAAAGCGGTTA 203280 29 100.0 32 ............................. GCGTGGGACGGCACGACCGGTACGCCAGTCGC 203341 29 100.0 32 ............................. ATTGCGTGCAGCCAGCTCGCGCACGAAGTCCG 203402 29 100.0 32 ............................. ACGGTGCGCCATGTAACCGATGCCGTAAATAC 203463 29 100.0 32 ............................. TATGAATTTTATGGCGCACAGTGGGATGAGAT 203524 29 100.0 32 ............................. GCCGTCACATTTTATGTGGCGGTGCCGGAAAA 203585 29 100.0 32 ............................. GCACGCATTGCGCGGGTTTTGTTGATTTGCGC 203646 29 100.0 32 ............................. TTCAACATCTTCTTGCAGCCGTTGCGCCATTT 203707 29 100.0 32 ............................. GTGACTTGCTTCAGGCCGCGACCGCGATACTT 203768 29 100.0 32 ............................. TATCGGTGCGGGTAGAGAATCTGCATCTCGCT 203829 29 100.0 32 ............................. ATCCGGCTCACTGGCAAATCGTGGACACAGAC 203890 29 100.0 32 ............................. CGCGGTAAATGAATTGAACGTTCACAAATACC 203951 29 100.0 32 ............................. CAAAAACCGTCGCCCTTACGTATAACTACGTT 204012 29 100.0 32 ............................. CGGCGGCACTTGCCGCTACGCCTGGCGAGTGG 204073 29 100.0 32 ............................. CCTGTCTCCCGAGCCTTTCCCAGATATTCAGT 204134 29 96.6 32 ...............A............. TCCAATAAATTAGGAGGTCGTCGCCGGGCTGA 204195 29 100.0 32 ............................. CCGCGCGCCTGGCGCAGATGGAGAGCCAGCAG 204256 29 93.1 32 .C..........T................ CTGTGATTCGCAAATCAGAGCAGTGCATGAAA 204317 29 93.1 32 .C..........T................ GCGGCGGCTTACGCGCCAGCCGCTGCGATGGC 204378 29 96.6 32 ............T................ TAACCAGTCAGCCAGTTTTAGAAACGCCTCCC 204439 29 96.6 32 ............T................ GCGCGGCGTTCGTAGAGGTTGCCGCAGGACAT 204500 29 96.6 32 .......................G..... GGCGGGAGTTTGCGCGGATTGTCGGTTCCGTG 204561 29 96.6 32 .C........................... AATTGCGCAGCGGCAGCGGCGATCCGGTTATT 204622 29 96.6 32 .C........................... CCAGTAACGCTTTTTTAGCTGTCAAAACGAAA 204683 29 100.0 32 ............................. CCCGCAGAGCACTCACTATCTCGACGTTTCCC 204744 29 93.1 0 .C....................C...... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.7 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAATAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCATCCGTAATAAACCGCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGTGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGTTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230442-231997 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOX01000002.1 Cronobacter sakazakii strain MOD1_LR713 LR713_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230442 29 100.0 32 ............................. CACCGCCACGCCAAACGCACCCGAAATAGATT 230503 29 96.6 32 ............................A GCGCCAGCATTTTGCGCTTGTCCTCTTCGGTC 230564 29 100.0 33 ............................. GAGTTGTTTACTCACACCCGGCGTCGCTTCGAC 230626 29 100.0 32 ............................. TATTCCATTCTACGATTGGCTTAACATCACTG 230687 29 100.0 32 ............................. CCAAACGCCTGGACTTGTGGTACGAATGGATG 230748 29 100.0 32 ............................. AAAAGATATTGCAGCGGAGTATGGTGAAACTG 230809 29 100.0 32 ............................. TGGAGGAACGGGCCGACATTATTCGACAGGCC 230870 29 100.0 32 ............................. TTCCGGCAGATGAAATCCTGGGGATCGTCAAA 230931 29 100.0 32 ............................. CCAGACTTCATCGGGAAATAACCAGCCGTGGT 230992 29 100.0 32 ............................. CGTTAATGCATTTGCGCTGCCACCAGCCACAC 231053 29 100.0 32 ............................. GCCCGGCGAAAAATTATCGCCGGTGGTTGTTA 231114 29 100.0 32 ............................. CCGGTTAATGAGCCGCTTGCCTTTCTCGCTGC 231175 29 100.0 32 ............................. GATAAAACGGCCATAACGCTCAAGGTGAGCGC 231236 29 100.0 32 ............................. TGCCATTTGGCACATTTTTATTACAGTAGCTG 231297 29 100.0 32 ............................. GCGGGATAAATCGGCATCTTCGACACCTTTAA 231358 29 100.0 32 ............................. CGCCGTTTTAACTCTCTGGTGTCAGCAATGAT 231419 29 100.0 32 ............................. ACCTTGCTCGCCCAGACCTGGCAATCCCGCAA 231480 29 100.0 32 ............................. TTTGAGAGCGCGGCCAGCGGCGGGAGTGAGCC 231541 29 100.0 32 ............................. CCGTGGTCTCAATTTCACGCGGCGACAGCGCG 231602 29 100.0 32 ............................. GGATCAACCTCGTACTCATCACGGCCGCCAGT 231663 29 96.6 32 .........................G... GCGATATTTATAGGTAATTTGATATTGTGCCT 231724 29 100.0 32 ............................. CGAAAATATGACCGCAACCGCTGAATTAGCCA 231785 29 100.0 33 ............................. TGACTGTTCGAGCGAGCTGAATCCATTATCGGC 231847 29 100.0 32 ............................. ATTGGGCGTTAACGTCGCTAAATTATCCTGAG 231908 29 96.6 32 ............................A ACTGAATTATCGAACTTTCTGGCCCGTTTTCA 231969 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GATGTCCTCTCGGCTGGTGGTATTTCGCCTCCAGCGCCTCCTGCAGATGCTCAACCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGATTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCGCGAAAAAGTTTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAACTTTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //