Array 1 137928-139907 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVF01000005.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5297 NODE_5_length_367053_cov_66.608567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 137928 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 137989 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 138050 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 138111 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 138172 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 138233 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 138294 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 138355 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 138416 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 138477 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 138538 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 138599 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 138660 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 138721 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 138782 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 138843 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 138904 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 138965 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 139026 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 139087 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 139148 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 139209 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 139270 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 139331 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 139392 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 139453 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 139514 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 139575 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 139636 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 139697 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 139758 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 139819 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 139880 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 156480-158339 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVF01000005.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5297 NODE_5_length_367053_cov_66.608567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 156480 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 156541 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 156602 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 156663 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 156724 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 156785 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 156846 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 156907 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 156968 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 157029 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 157090 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 157151 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 157212 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 157273 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 157334 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 157395 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 157456 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 157517 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 157578 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 157639 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 157700 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 157761 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 157822 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 157883 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 157944 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 158005 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 158066 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 158127 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 158188 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 158249 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 158310 29 96.6 0 ............T................ | A [158337] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //