Array 1 165206-163729 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHEA01000018.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain CVM N43463 N43463_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 165205 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 165144 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 165082 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 165021 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 164960 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 164899 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 164838 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 164777 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 164716 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 164655 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 164594 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 164533 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 164472 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 164410 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 164307 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 164246 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 164185 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 164124 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 164063 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 164002 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 163941 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 163880 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 163819 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 163758 29 96.6 0 A............................ | A [163731] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182830-181338 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHEA01000018.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain CVM N43463 N43463_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182829 28 96.6 32 -............................ CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 182769 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 182708 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 182647 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 182586 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 182525 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 182464 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 182403 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 182342 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182281 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182220 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 182159 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 182098 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 182037 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 181976 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 181915 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 181853 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 181792 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 181731 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 181670 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 181609 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 181548 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 181487 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 181426 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 181365 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //