Array 1 69491-66372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNHG010000001.1 Bifidobacterium longum strain D52t1_170925_H5 NODE_1_length_257011_cov_26.3148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 69490 36 100.0 28 .................................... AGAAAATGCCCGGTCTCGATCTGATACA 69426 36 100.0 28 .................................... TCAATAAACCTTTATCTCATTAAGATAC 69362 36 100.0 28 .................................... GGAACGCCGGAAGGGTGTTCTAGCGGCC 69298 36 100.0 28 .................................... TCATGGGCCACAGGCTCACCATCTCACC 69234 36 100.0 29 .................................... GTAGGTTGTTCTTGCCGCTTGTGGCGTTC 69169 36 100.0 29 .................................... CGAGCCTTGCGCGATTGCCACGACGGTAG 69104 36 100.0 28 .................................... TTCACTGTTCGTCTCCAATCTGCTGGGG 69040 36 100.0 29 .................................... TTGGCATCCCCCTCATCATCTCCAAGCAT 68975 36 100.0 28 .................................... GAACAGGCGGAGGAAGTGACCCGGCTCT 68911 36 100.0 28 .................................... CTCGTTACATTAGACTGACAGAGTTGAT 68847 36 100.0 28 .................................... GCTCTGGAACGCCGTTTCCAGCCGATTC 68783 36 100.0 28 .................................... GCACCGTTGATGGCGTTGATGGTTACGG 68719 36 100.0 28 .................................... ATATATCGGCGTTTCGGAAATCGCGTCA 68655 36 100.0 28 .................................... ACCATGCAGATGAACCGCATGCATCAGA 68591 36 100.0 28 .................................... TTGGTCATGGTGGGCCTTTGGATGCCGA 68527 36 100.0 28 .................................... AGTGGGGGTATGTTGACCCGTCTGAGTT 68463 36 100.0 28 .................................... CGTGCCGCTGAGGTTTGCGCGACACTTA 68399 36 100.0 28 .................................... ATTAAAAGCGGAGGCGCTTAATGTTCTC 68335 36 100.0 28 .................................... ATCACACTGTCCAAACCCAGACGCCTAG 68271 36 100.0 29 .................................... GCTCCTAGCCTATCGGTGTTACTGTCTGG 68206 36 100.0 28 .................................... GAGTTCACCGTAAGGCCCACGCCTCAGG 68142 36 100.0 28 .................................... AGATAATTGTTTACGCTGTTGATATTGA 68078 36 100.0 28 .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 68014 36 100.0 28 .................................... AATGCGCTGAAATACGGGTTGGCCAACG 67950 36 100.0 29 .................................... GTGAGGGACACCTTCATCCGCATACTGCA 67885 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 67820 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 67756 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 67692 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 67628 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 67564 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 67500 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 67436 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 67372 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 67307 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 67243 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 67179 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 67114 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 67050 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 66986 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 66922 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 66857 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 66792 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 66728 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 66663 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 66599 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 66535 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 66471 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 66407 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 49 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCGGGCTTGTCGGTTCACGCGAATATCGTGGAACACATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //