Array 1 109920-107876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQSY010000004.1 Salmonella enterica strain SX149 NODE_4_length_431008_cov_223.689127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109919 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 109858 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 109797 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 109736 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 109675 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 109614 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 109553 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 109492 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 109431 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 109370 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 109309 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 109248 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 109187 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 109126 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 109065 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 109004 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 108943 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 108882 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 108821 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 108760 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 108699 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 108638 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 108577 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 108516 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 108455 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 108393 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 108332 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 108271 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 108210 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 108149 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 108088 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 108027 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 107966 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 107905 29 100.0 0 ............................. | A [107878] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127286-126465 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQSY010000004.1 Salmonella enterica strain SX149 NODE_4_length_431008_cov_223.689127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127285 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 127224 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 127163 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 127102 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 127041 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 126980 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 126919 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 126858 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 126797 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 126736 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 126675 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 126614 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 126553 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 126492 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //