Array 1 210148-208680 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXFE01000001.1 Pseudomonas aeruginosa strain AUS226 IPC252_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 210147 28 100.0 32 ............................ ATCGACGAGTTCGCAGCCATCGGCGCCACCGT 210087 28 100.0 32 ............................ TATGCCTCGCGCAATGGCAACGGAGACGAGGC 210027 28 100.0 32 ............................ TGAGCGAGGAACGCCGCCGCACGCACCGGCGA 209967 28 100.0 32 ............................ TGAAATCCGCATTGGGTTAACGGGGCATAACT 209907 28 100.0 32 ............................ TCGATGCCGACCGGGCACCGACCCGCGCCGTT 209847 28 100.0 32 ............................ ATCGCCGTCAGAGCCGCCACCGCTGCCGCCAG 209787 28 100.0 32 ............................ ATTATGCGAGGCCACTTTTGGTACCGGCAGAG 209727 28 100.0 32 ............................ AACACATAGCCAGCGCGTGCAAGCTGCTGGGC 209667 28 100.0 32 ............................ ACTGCCGGTAGCGCTGGGCGGGAGCGGTCGGC 209607 28 100.0 32 ............................ TGGGGCCGGAACAGCGGCCGGGCCTCGTCGTC 209547 28 100.0 32 ............................ CATCCATGGGAAAACAGGACTGGTCATATTGC 209487 28 100.0 32 ............................ TATCCCTCCCTCTTTTGGCATGTGTCAAAACA 209427 28 100.0 32 ............................ CTCCCCAGCGCAGGCCGAGCAGGCAGAGGCGG 209367 28 100.0 32 ............................ AAGCAGCGCGAAGCGTTTTTGAAGCACCTGGG 209307 28 100.0 32 ............................ TTGCCGTTGTCGCTGTAGATGTTCCGCGTTAC 209247 28 100.0 32 ............................ ATATCGGGCCGGCTGCGAGAATGAACAGGTAC 209187 28 100.0 32 ............................ GCGCCGCGACTTCCTCGGCGTATTCCTTTTTC 209127 28 100.0 32 ............................ TACATCCGCGCCCTGAGTACTCAGCGTGTGGG 209067 28 100.0 32 ............................ TGCCAGGAAGCCCATGAGGACGCCCGGCCAGA 209007 28 100.0 32 ............................ TGTTGGCCGACGCCATAGCGGGCCAAGTAGCC 208947 28 100.0 32 ............................ TAGACGGCGATAGGCTTCTTCGGCCGCTGCCT 208887 28 100.0 32 ............................ TCTTTGCGTTCGATAAGGCCGCGCCTCTGGAG 208827 28 100.0 32 ............................ TCGCCGCCCTCCATGGTCTGGCTGAGCGTGCC 208767 28 100.0 32 ............................ AGGATCGTGATGTGGCAGGTTTCCGCGTCCAG 208707 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAAGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGTCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCAGACAGGAAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAACAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGTGAATGCCGTCATAGACGGTATCCGCCGGTCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGGTGCCGGGCCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCACTAAGCAACAGCGCCCCCCCTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19746-20313 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXFE01000019.1 Pseudomonas aeruginosa strain AUS226 IPC252_19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19746 28 100.0 32 ............................ GGACGACCATGGCGTGACTTACATTTGAACTC 19806 28 100.0 32 ............................ TCGCATTGAAAATCACCTTCTGGGATTGTTGG 19866 28 100.0 32 ............................ AATGATGCATGGGAGGGGTGGAAAGCCCGCGC 19926 28 100.0 32 ............................ TGGCGCGCATACTGTCCGATGCCTCGGGCCTT 19986 28 100.0 32 ............................ TACCACTGGAAGGACGAGGCCGAGTACGAGCG 20046 28 100.0 32 ............................ AGCATGCCCTTACGCCGATGGCGGGCAATTCC 20106 28 100.0 32 ............................ AGTGGCTTGTGAACGACGAGAACATGCTGGCC 20166 28 100.0 32 ............................ CGGGCAAGGGCCGGCCGGTGAAGGAGCACATT 20226 28 100.0 32 ............................ ATCCCCAATCGGCAAACGGGCTGCTCGCGACC 20286 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 33 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACGTCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCCCGCCCATCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30356-29188 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXFE01000019.1 Pseudomonas aeruginosa strain AUS226 IPC252_19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30355 28 100.0 32 ............................ AGCTTGCACGCGGGTTCGTGCGACATGGCATT 30295 28 100.0 32 ............................ TACACCCCGACACCCTGGCGATCGCCCGGAGC 30235 28 100.0 32 ............................ AGCGGCTAAGTTCAAGGTCGGCGACATCGTAA 30175 28 100.0 32 ............................ TGTTGACGGCGGCGCGAGCGGCGGCCGCGTCC 30115 28 100.0 32 ............................ TTGGTGGCGTCGGCGTCGATGTGCAGGCCCGG 30055 28 100.0 32 ............................ TCGTTGACATGAACGCAACGCAGGCGGCCATC 29995 28 100.0 32 ............................ TTCTGGAAGCTGGCTCTCCGATGCAGCCTCGC 29935 28 100.0 32 ............................ TCGGGCCTTCCTCGCGCAGGCGCTCCACTGAG 29875 28 100.0 32 ............................ AAATCCCCGTCAACTCACTCCGGGGGCCGGCT 29815 28 100.0 33 ............................ ACCATGGCGGCACGGCCAGGTGCGGCGACTTAT 29754 28 100.0 32 ............................ TGGCGCGTCGCGGATCTGCATCCGTACCTCGG 29694 28 100.0 32 ............................ TTCGAGATCAGGTGCATGAGCATTTCGCGCAG 29634 28 100.0 32 ............................ TAGAGACGCTGGCAGAGCTGGCCACCTGGTGC 29574 28 100.0 32 ............................ GCTCGGCTCGGCCCATGCCGATCCAGCGATGA 29514 28 100.0 32 ............................ GGCGGTATAGGCCGGCAGTTGGCCGTCTGGGT 29454 28 100.0 32 ............................ CGACCGCTGCCCGACCTACGCCGATGCCCTCG 29394 28 100.0 32 ............................ ATGCCGAGTACGTCGAGCAGCGGAGACGCATG 29334 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 29274 27 89.3 32 A....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 29215 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTATGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGGTGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATCAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //