Array 1 479830-481712 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSK01000001.1 Pannonibacter phragmitetus strain NCTC13350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 479830 36 97.2 30 .................G.................. GTTCGCGCTTCACCAGGTCCGAAACCTGAG 479896 36 100.0 30 .................................... GGCGGACAGAGGCGCTGCGGGTGGCGACTG 479962 36 100.0 30 .................................... TCCGCTCAATCCGCGTGCGTGGACATTGTC 480028 36 100.0 30 .................................... TCAACGAGACAACGGCGATGCGCGTCGCTG 480094 36 100.0 30 .................................... GAAGCGCTCAACGTCTTCGACGGCAAACCT 480160 36 100.0 30 .................................... CCGCCATCATCTGGATCCAGTTGTCACGGG 480226 36 100.0 30 .................................... TCGGCGATGCTGCCATCCTCCGCGAGCTTA 480292 36 100.0 30 .................................... GGGTGCCTACCTCGAGCACTCGCTTCCGAA 480358 36 100.0 30 .................................... AGCAGCTCGCATAATTGGGGCCGTGCCGCT 480424 36 100.0 30 .................................... TTCGCCGCTGCCATCTCAAACGGCTGGATG 480490 36 100.0 30 .................................... GGTCCCATTTCACACGCCCTCGTAGTCAGC 480556 36 100.0 30 .................................... CCCATGAAGCTCGTTCCCAGACAGTTTTCC 480622 36 100.0 30 .................................... GCGCCAGGTGCTCAGCGCCTGGCCGTGCAT 480688 36 100.0 30 .................................... CCCATTTCACCGCAGGACCACGCGTATTTC 480754 36 100.0 30 .................................... ACCGCCGCCGCCGCCATCTCTTTACGGAGG 480820 36 100.0 30 .................................... TGCAGCCCGACACGTGCAGCTGCAGCATCG 480886 36 100.0 30 .................................... GCTGGACGCCATGTGGCAGGAGCTGCGTGA 480952 36 100.0 30 .................................... CCGGCGTGATGTCAAAAAACTGCAGGCTGA 481018 36 100.0 30 .................................... TTGCCGAGATCCGCATGGGCTATGCGCAGA 481084 36 100.0 30 .................................... GAGAATGTGAACTTGTCGAACTCCGACTTG 481150 36 100.0 30 .................................... CCGAACGGCAGGCCGTGATCGACAGCAACG 481216 36 100.0 29 .................................... TTCGTGAAACCGGGCCTTGAGAATATCGA 481281 36 100.0 30 .................................... GATGGCCACGCGCTTCGGCCGCGTCACCTG 481347 36 100.0 30 .................................... GTGGTATCCCCGCCATATCGGCTTCCTGGG 481413 36 100.0 30 .................................... ATCACTGGGCATGGCCGTGCCCGCATTGCC 481479 36 100.0 30 .................................... GACAGTGCCGTCCGTGTCCACAGATTGCCC 481545 36 100.0 30 .................................... ACCAGTCGCCCATGCTGGCCTGCAGCTTCA 481611 36 100.0 30 .................................... ACATCGGATATTCTTCAATCCCGCCCGTGA 481677 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.9 30 GTTCCGGCTGGACCGCGATTTCTGAACTGATAAGCT # Left flank : TGGCCCGTGGCAAGCGTGCCACCGTGCTTGGTATCTCCTCCATAGCCCGGCAAGGCTCAGGATCATTAGGCATCTTTCCTGTCCGGAACCTGTCCGGATTGTAAAAAGATGCGCCCCATGCGTGATGTTCTCCTCAGATCATCCCGCTCTTCGCTGGAGCACCAAGAATGTTGTGAAAGATCATGCGGCCAAGGTCAAGCATCTTCAAGGCCTCGGCCCGGGCGGTGAAGTGCATCCGGCAGGAGTGAGGAGGGACATATTGCAGGGGTGATTCAAACATCAACGTTACCCCATGGTTATTGTTGAGCCCAGCAGGCAGGAAAGCCCCGTTACGTTTCCTTAGCCAGTCTTGGGACGGGAGCTGACGAGCCTCCCTCACCGGAATGCGCTCAAGCCCATGGGCCGGCTGAGCAATTTCAGGATATGACGCCGCAGCACCGCAGCATCCCGGCGCCAAACGGCTCCACCCGCGTCCAAGCTGACGCAGCGTGGATCGATTG # Right flank : TAGGTGTCTGTCCAATTCCCTGAAAAGAAAGGGGAATTGGGCAGTTCCCTGCGCACAAAACGGCCAGAACCATCAGAACAGGGCAAGCTGTTCCGGGTTTTTCTTCCGCTTCTTGCGGGCCTGATCCGAGAATCGGACGATGTTTTCATACTGGCGGTCCGTGAACTGGAAGATGTAGATATCGCCCCATTCCGGCAGCGCCTGCTCGATCTGGCGGACATAGGCGTCAAATTTTTCCTTGCCACTGCAGAATCTCAGGTAGTTGGAAAGCTGGCTCATTTCGAAGCCGATATCCAGCAGAAACTGGCGGAATTTGGTGGCCGCGTGCCTCTGTTTCTTCGTCTCGACCGGCAGGTCGAATGTCACCAGCATCCACATGATCCTGTATCCGCTCAAATGGGTTGCGCCGCTGTTGGCCCTGAGGTTCCGCTTGTTCATGCCTCCTCCATGTCTTCCCGGCCAGATTCCCGCTCTGGCTCTGCCTCCTGAGGCCAGCCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCTGGACCGCGATTTCTGAACTGATAAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 2766811-2764830 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSK01000001.1 Pannonibacter phragmitetus strain NCTC13350, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2766810 29 100.0 32 ............................. GCTGGCGCGAAGGCGCTGGCGGATGCCGGTCT 2766749 29 100.0 32 ............................. CCAGCGGCAAAGACGCGGACGCGCAGAGCCAG 2766688 29 100.0 32 ............................. GTCACAGCCTTCCACAGGCAGGACCCACGCGG 2766627 29 100.0 32 ............................. GATCAGGCCACGGCGGCGCGCGGCATGCGGAT 2766566 29 100.0 32 ............................. GCTGGCGCGCAGGTTGGCTTGACCCTGCGGGC 2766505 29 100.0 32 ............................. ACGTTGCCCCCACAATTAGCAGCCGTCCTTCA 2766444 29 100.0 32 ............................. TTCAGCGGCGGCGGGGGTGAGATGACTGCGTT 2766383 29 100.0 32 ............................. AAACTGCACAATGCTGCTGGCGCCGGTTCCGG 2766322 29 96.6 32 ............................C GTTGATGTCAGGTGCTGCACTTGAGCAGTTTG 2766261 29 100.0 32 ............................. GGGCGGCCCAACAAAGGAATGAAGCCGGGCGG 2766200 29 100.0 32 ............................. CGGCGGCAGCGGCGCGGAGGTTGAGTTCGGCG 2766139 29 100.0 32 ............................. GCGCCCGGCCACTTTTCCCTTTCAGTTTTTCC 2766078 29 100.0 32 ............................. CCGGGCGGTTTCCGGCGCTTGTTGCAAATGCA 2766017 29 100.0 32 ............................. AATGGTCTTTTCGTCGATGCCGGTGCGAGCCG 2765956 29 100.0 32 ............................. TTTAGACCCCCTCTCCCTGCCCTAGAATGGGC 2765895 29 100.0 32 ............................. GGCTGTTTTTCGCGGCCCGTCCGGCATGGCCT 2765834 29 100.0 32 ............................. CAGGACGATGGCCCGCTCAACCCCGACCAGAC 2765773 29 100.0 32 ............................. GCACGCTGGACAGTATGCGTAATGCGCAGCAG 2765712 29 100.0 32 ............................. TCATCTGCTGCTGATTTGCGCCAGCCTTCTTC 2765651 29 100.0 32 ............................. TAGGCGAACACCTCTTTGTGCCAGTTATCGAC 2765590 29 100.0 32 ............................. CTGGACGAGATTGTCACGGAAACCCAGCTGCA 2765529 29 100.0 32 ............................. TTCACCCATTACCGCTGGTTCAACAAGGATGC 2765468 29 100.0 32 ............................. GTCCATGTCACCAGTAGGTCGCCGCTGACCTC 2765407 29 100.0 32 ............................. GCTAAACAACATGAGCGGGCACGCAGACAGAC 2765346 29 100.0 32 ............................. GCCGATCAATGCGAGCTGGTGAACATTGGTGA 2765285 29 100.0 32 ............................. GCATCGAAAACACGGTGGCTCTGGCCAGCATG 2765224 29 100.0 32 ............................. CCACGGGCCTGCTTCAGGTCGTTCCAATCGGT 2765163 29 100.0 32 ............................. TTCAGCGTGGGTCCTGCAGGTCACCTCGTCGA 2765102 29 100.0 32 ............................. TTCCCTCAGCCGAACTACGTCACGCTCAAGAT 2765041 29 100.0 32 ............................. CGTTCGTTGCAGACTGTACTCGGACGACCTGT 2764980 29 100.0 32 ............................. ATTTCGTTCTCTCTGAAGCATCGCAGCGATGC 2764919 29 100.0 32 ............................. CGTGTTGAGGTTTCTGGCGTGACGATGGAACG 2764858 29 93.1 0 ..........................G.T | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CGGACTACGCCGTCGATCCGGCTTTCGAGGATCCCTCTCCCTCCGGCGATGCGGGGCACAGGTCATGATGATGGTTGTCACCACCAATGCTCCGCCCCGGCTGCGCGGGCGTCTCGCCGTCTGGCTGCTGGAGGTGCGGGCAGGCGTCTACATCGGCACATACTCGGCCCGCACGCGCGAGATGATCGCCAGTCAGGTGGCGGCGATGATCGAGGATGGGGATGCCGTGATCGCCTGGACGGCCCCCACCGACGCGGGCTTCGACTTCCAGACCTATGGCCGCAACCGGCGCATGCCCGTCGATTTCGACGGCCTGCGCCTCGTCGCCTTCCATCCGCCGGATGCCGGAAATCCGGGGCCGGGTGGGCTCGGATCAGGCTGAAACAGGCCGGCCGGACCCGTTATTTTGCCCGTCTCCGGAAGCCCGCAAAACCGCCCAAAAAACCGGTAGCTTCCCGCTCTTTGAAATTCTACAATGAGATCAATGCTCTCCAGCAAGA # Right flank : CTCGCGGGAGAGCGTGTCCGGTGAGTTGAACAGACTGTTGTTTGAGCTTGAGCAACCACAAGAACCGCATGGTTTGGTTGTCGCTTGACAACCGGGTCATGATGTCCATTTATGGGAGGAGAGATATTGCGCAGAGTGCCTCCGGACAGGGAAATCGAAGCGGCGTTAAGGCATGCTGAAGAGAAGGGCTGGCGGATCAGGCTGGGTGGCAGCCATGCATGGGGCAAGATGTATTGCCCTTACAATGATGATAGCTGCCGCTGTGGCGAGTTTTGTATGACGAGCATATGGAGCACGCCAAAAAATGCCGGATCACATGCAAAGGCACTGCGGCGCGTGGTGGATAAATGCTCCATGAAGACTGGAGGGTAAACGGCTCAAGGCAGAGGGGAGTGACCATGATGAAGGAATACAGCTTTACATTGAAATACCGCCTGCCTGCAGAGGATGCCGGTCATGACGCTATCGTGGAACGGCTTGGAGAGGCCGGCTGCACGGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2777765-2775658 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSK01000001.1 Pannonibacter phragmitetus strain NCTC13350, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2777764 29 100.0 32 ............................. GAACAGCGGAAGCCCAAGAAGGCGGCGCCGCT 2777703 29 100.0 32 ............................. TGGTGGCGGCGCTGGAGCGTTTTGCCGGGTTG 2777642 29 100.0 33 ............................. CTGGTGCTCTGGCATCTGGCCGACCGGCACCAC 2777580 29 100.0 32 ............................. CGGATCAGCGGTCTTGCCGGGCAGATGGAGGA 2777519 29 100.0 32 ............................. GACATACTGTCCTCAATTCATCCCCGCTCAAT 2777458 29 100.0 32 ............................. CCTGGGGCATGGTGGTTGGCAATGAAGATGAT 2777397 29 100.0 32 ............................. CCTGTGATCATTGCAAGATGAAGATCAGCGGT 2777336 29 100.0 32 ............................. CCGTTTGCAGGTTTGTGGTGGCCTGATCAACG 2777275 29 100.0 32 ............................. CGTATTCGGCCTTGATCTTGTGCGAGCTTAGT 2777214 29 100.0 32 ............................. CGCTTTCCAGAGACAGGCCTAGCTCATCGACG 2777153 29 100.0 32 ............................. GTTGGGGACAGATTGCTGATGGTAGAGCGATT 2777092 29 100.0 32 ............................. CGCCACCAGTCACCACGAACCCAAGACTACCC 2777031 29 100.0 32 ............................. GTCTTGCGCAGGTAACTGCGGTTGAGGCCTGC 2776970 29 100.0 32 ............................. ACGTTGCCCCCACAATTAGCAGCCGCACTACA 2776909 29 100.0 32 ............................. CGCGGCGTTCGGTGGCGGCAATACGAGCGGTG 2776848 29 100.0 32 ............................. GCTGGCGCGCAGGTTGGCTTGACCCTGCGGGC 2776787 29 100.0 32 ............................. CGGACAAATGACCGCGCTTTGTCCGCTTGTGT 2776726 29 100.0 32 ............................. ACCAGCATTGCGGCAGGGATCCTCGTTACCGC 2776665 29 100.0 33 ............................. GCCAGCATGGCGCAGCGGCGGACGGCGGAGCTC 2776603 29 100.0 32 ............................. CGCTGCGCATTGCTGGCGCGATCCGCTCCGTG 2776542 29 96.6 32 ............................A TGAACGTGGCCTTGGAGCCGGTGATAACATCG 2776481 29 100.0 32 ............................. GTGGCGGATCTGCGCGGCACGTGCCGGGACAC 2776420 29 100.0 32 ............................. GCGAACAACGTAGGCCAACATCGCCCTACAGA 2776359 29 100.0 32 ............................. CGCCAGCTTTCCTTGCGTTGCGTTGAAGCTCT 2776298 29 100.0 32 ............................. GTTATCTGGACCCGGCTCCGGCTGATCCTGCG 2776237 29 100.0 33 ............................. TCCGTCAGGCTGGCCAGATCCTTGATCCACGGC 2776175 29 100.0 32 ............................. TCGTCTCGGTCCTGCTGACCAATCCTGGGGTC 2776114 29 100.0 32 ............................. CGCGGGTAGAGCGGGAAATGGATGCGGCGGCA 2776053 29 100.0 32 ............................. GTCACTTGGCGCCTCTACGACAACGTCGTGAT 2775992 29 100.0 33 ............................. CGGCTTTGCCACTTCCTGGGGCAGATCGCCTGT 2775930 29 100.0 32 ............................. ACCGCCGGAGAGGCGGTCCCGCAGATTGACTA 2775869 29 100.0 32 ............................. GGATCCGGAGTGCCGACGTTCTGCGTCTTGCC 2775808 29 100.0 32 ............................. GAAGACTGACCGGGAAGGCGGGCTGGGTGGCC 2775747 29 96.6 32 .......T..................... AACGCCTCAGGGTACAGCGTGCGCTTGCCGAA 2775686 29 89.7 0 .................A......GG... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.5 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : ACCCTGCGCATCGCCCGGATGCGGGATGGAAAGCTGGTGCCGCTGGCCGAACCCGGCGGCCCCGGCCCCGATGCCATGGCAGAGGCCTGGGCCCTGTCTGCCCTCAGTTGCCGCAAGGCAATTCTTACCCGGCAGGGCAGGGATGCAAGCCCGGCACCGGACGCGGCAGAAGAAAGGTGCCGCACCGCTGCCCGCGAAACCCTGCGCCGCAGTTGGCCGGAGTTCGAGGCCTCCATCGTCATCGCCATTCTGGAGGAAGACGGCCATCTGGATGCGGGCCCGGACTTCAGCCGCTCGCTGTCCTACAGCCGCAGCAAGGGCCTGATGAACGGCGCGGCGCGAGAGTGATGCCGCTCTGCCAGAGCTGCAATCTGGCCGGGTTTCTCTTGCCTGTTACAGCCCTTTGCGCCACTCTCCAACCCGCCCCCGAAAGCCCCTGATTTTCCGGTAGCTTTCCGCTCTTTGAAATTCTACTGTCAGATCAATGCTCTCCAGCAAGA # Right flank : GACTTACGGCATCCTTGCTCTTGTTTGATGGACTGGAGGCAAAGGTATCGCAGAGGTCTCCTAGACAAATTGCACTCTATGGAGTACATGTTTATGGTCAATGTGATCAAGACGGATGCCTTTCACCGCTGGATGAAATCCTTGGCAGATCAGCGGGCGAGGGCACGGATTGCCATGCGCATAGACCGGCTTGCCGAAGGGAATGCGGGGGATTTTGCGCCGGTAGGCGAGGGCGTTTGCGAATTGCGGATAGATTATGGACCCGGCTACAGGGTCTACTATTTGCGGCGTGGTGACGCCTTGGTGCTGCTTCTGTGTGGCGGTGACAAGAGCACGCAACCGGCAGACATCAGGAAGGCTTTGCAGATCGCACATGAATGGAAGGACGGATGATGACAGTCCAACTCAGCCCTTTTGACAGTGCCGAATATCTCGACAGTGAAGAAGCCGTCGAGGAATATATGCTTGCGGCCTTCGAAACGGAGGATCCTGCCTTTATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2809445-2810801 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSK01000001.1 Pannonibacter phragmitetus strain NCTC13350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2809445 35 91.7 30 .A.-.................C.............. GCCGGTGCAATGACCGTGCGGCCGATAAGA 2809510 36 100.0 30 .................................... GGCCTCAGCGCGGCGCAGGCTAACCTCGGA 2809576 36 100.0 30 .................................... ATCGGCGGCCAGTTCAGCGGCGAGGTTTAC 2809642 36 100.0 30 .................................... CACGCGCCGCGCCAATGTCAACCCCGTCCA 2809708 36 100.0 31 .................................... TTAAGGCCAGCCGCCAGATCATTGGCGGACA 2809775 36 100.0 30 .................................... AACGGCACACCATCATGGGTGATGCTGCCG 2809841 36 100.0 30 .................................... CCAGCGTGCCCAGTTCTGGCGGCCTGAGTA 2809907 36 100.0 30 .................................... CGGCGCCAGCCCTTCATGTGGTCAATTTCA 2809973 36 100.0 30 .................................... GCAGCCGCCCTCCACGCCTTGCCCGGGTTG 2810039 36 100.0 30 .................................... TTGTGCGCGCCTACGGCCAGCCGATCCGGC 2810105 36 100.0 30 .................................... GCGCAGCCTCTCCGGCCGCACCCCGTGGCT 2810171 36 100.0 30 .................................... CCCGCCGGGCTGGACAGGCCTGCACTGTGC 2810237 36 100.0 30 .................................... TCACACGGTTCTCGGACGTTGGCCGGTGAA 2810303 36 100.0 30 .................................... ATCGCAAATCTGCGCGCGTGGATGGATGCC 2810369 36 100.0 30 .................................... TACTGGACCATGTCATCCACGCTGATGTAA 2810435 36 100.0 30 .................................... AAGCGCGCGTCGAAGGCGCTGCACATCCTG 2810501 36 100.0 30 .................................... AATGTCGTCATGGCTGCGCTCGTCTGTTTC 2810567 36 100.0 31 .................................... TTCGGACGGCACGTTGGCGCGCTCTACTTCT 2810634 36 100.0 30 .................................... GCAAACGGCTTGCGCCGAGTACGCCGACTG 2810700 36 100.0 30 .................................... TCGAAGGACTTTGCGGCGGGCAAGGGCTCA 2810766 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.6 30 GCCGTGGCTTCCCTACCGATTTCCCTGTGGTAGGCT # Left flank : AGGCTTCGTGCTCGATGCCCTGGAGCAGGCAATCCATGCCCGCAGGCCCGGCCCCGAGGATGGACTGATCCATCATAGCGACAGGGGAACCCAATATCTTGCCATGAACTACACCCAGCGCCTGGCTGAGGCGAACCTCGTGCCATCCGTCGGAAGCGTCGGTGATAGTTACGACAACGCCTTGGCCGAGACGATCAATGGCCTCTACAAGGCCGAGGTCATCTGGCGCCAGCGGTCATGGCCGAGCGCGTCGGCCGTCGAAATGGCGACCCTGCGCTGGGTCGATTGGTTCAACAACAACCGCCTGTTCGGCCCCATCGGGCACATCCCGCCCGCAGAGGCCGAAGCCAAATACCATGCAGCCCAAAAGACCCTCGATATGGTTGCATGACTCAAATGAAACTGCCTCCGGAAAACCCGGGACGGTTCAGGGTGCTGGGAAGTCACGTCTTGTCATCAAACCGGACAAGCTGCCTTTAAGGGATGCCCAAGGTTGCCAA # Right flank : TGCCTTTGGCACAAAGCGTTGTTTTGTTGAGATAAAAGGCTCCCAGGGCGGAGAGGAAATCAGAGGAGAACAAGTTGTTCACTCGCCTTGCGCTCGGTTTTAGTTGATTCGCCAACAAGCAGTTTCATTCGGGCATATTGCTTGTCCGTGATCTGCAGCGTACGCACACTGCCCTTCGGAGGCAGGTTGGATTTGATGCGCTTGAGGTGCTTTTCCACACCTTCTTCCGCGCGGCAAATCCGCGCGTAAACCGAGAACTGGATCATCAGAAAGCCATCCCGTTTCAGAAAATTCCGGAAGCGTGTCGCATTGCCGCGCTCCTTTTTTGTCGTGACCGGCAGATCGAAGAACACCATAAGCCACATGAACCGGATGTCCTTGTTCATTGGCGAGAGCAGACCGAGAGTTTGGGCAGGTCCAGCAAGTCTGCGGAGCCATGTTCCAGTGCCTGCACCAGGCTTTGCGCGGCGATCTCAGTGGCATTCAGGAGGCTCATTTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGCTTCCCTACCGATTTCCCTGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //