Array 1 730289-736437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEKF010000002.1 Marinomonas ostreistagni strain UST010306-043 Contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 730289 28 100.0 32 ............................ ACTTGCGTTACACCGAAGTAATTCGCACGCAG 730349 28 100.0 32 ............................ ACTGGCATCCAGTAGCGTGGAGATTGACAATT 730409 28 100.0 32 ............................ AGTTTGGTGATCTGCGGCCCATCCTTGAGCCA 730469 28 100.0 32 ............................ ATCTTGAGGCATTATGATATGCACCCCCAATA 730529 28 100.0 33 ............................ ATTAACGCTGCCATCGTGCGTATGGGATTTGGT 730590 28 100.0 32 ............................ GCAGCGGTGACGGCAAACGAGCGGCCGTCGAT 730650 28 100.0 32 ............................ TTCTTTTACTGGGAGGTTCGCACCAGATCCAC 730710 28 100.0 32 ............................ AGATTTTTAAGTTGTGACGATCAGACATAACC 730770 28 100.0 32 ............................ AGACAAGAGCGGCCTGTGTAGCCGTTGCCCAG 730830 28 100.0 32 ............................ AGTAGGCATAGAAATTACTGGCGTATTCGAAG 730890 28 100.0 32 ............................ GCGCAGCGCATGACCTGTTATTGCTTCGTAAG 730950 28 100.0 32 ............................ TCGACATCATGGCCCAGACAGAACGCCGCTTT 731010 28 100.0 32 ............................ TTCGTATTCAGCGTGGCGCCTAATACCGTTGT 731070 28 100.0 32 ............................ GCAGGCGACCACGGCTAGAAAGAAGATGTACA 731130 28 100.0 32 ............................ TAGCCCATTCCAATACTTTAAATAACCGCTGT 731190 28 100.0 32 ............................ CTGAATGGCCCAATCCATGGCGCTAGGAATTG 731250 28 100.0 32 ............................ GCAACCACAGTACCATTATTATTGACTGTAAT 731310 28 100.0 32 ............................ ACCTTAACTGGATCATTGGCATTAACTACTTC 731370 28 100.0 32 ............................ TTACCGGTAATAGAGTGCAAAACCACAAAGTT 731430 28 100.0 32 ............................ ATTAGCGTCTAGGCCGTCTATGTTCTTGGCTA 731490 28 100.0 32 ............................ TGTTCTTCTATAGGAGGACACTGTTCTTCTAA 731550 28 100.0 32 ............................ ATTAACGACATGGGATTGATCCCATCTAGCCC 731610 28 100.0 32 ............................ CATGCCGTGAGCTTGTCGCCCGTCAGATCGGT 731670 28 100.0 32 ............................ GAAAGCATCGACCCCGAGCAAGCCAAGGCAGA 731730 28 100.0 32 ............................ CCTTATATGACGCAAGCGCAATGGGCGGAATA 731790 28 100.0 32 ............................ ATTAGCGTCTAGGCCGTCTATGTTCTTGGCTA 731850 28 100.0 32 ............................ TGAAAATACTGCCGATATTTACCGACCTGCTT 731910 28 100.0 32 ............................ CGTAGTAGCCATACTGGATGGCGACGGCAATG 731970 28 100.0 32 ............................ GAAGTAGTTTGCGCGCAATGGATCATACTCAT 732030 28 100.0 32 ............................ GGCGCGCTAAATTTGTGACCAATTGGTAACAA 732090 28 100.0 32 ............................ AGCTATAGCCACTGGATCCATTGCCTCGATCC 732150 28 100.0 32 ............................ TCGTCTTCGTATTTCTCGACCTGCACTTTGAT 732210 28 100.0 32 ............................ CCGAGTTTCGTAACGCTCGAATCATAAAGAAA 732270 28 100.0 32 ............................ TGCTCAATAAAAAGGTTTGTGTGTATCTCTGG 732330 28 100.0 32 ............................ AGCGCCAACTTAAAACCCTGGACCACAATACC 732390 28 100.0 32 ............................ GGTCAACGATTTTTACGATCAGTTCTTTGGCT 732450 28 100.0 31 ............................ CTGAACAGGCCACCAAACCCCATACGCACAA 732509 28 100.0 32 ............................ GTATCGCAACCGATCGAGGCGGAGATCACCAC 732569 28 100.0 32 ............................ TGCTTAACTGAGCCGTCAGACAATTCAGAAAG 732629 28 100.0 32 ............................ ATAACCCTCGAATTTAGCAAACACAGCACCAA 732689 28 100.0 32 ............................ GCGAGCTGATGGAAGGCCAGAGCCAAGGTAAG 732749 28 100.0 32 ............................ AAGGAGCGAGCAACACCCTTTGCAATGGCATT 732809 28 100.0 33 ............................ ACATGGTTCTGAGTTCGAGTCACCACACATAAG 732870 28 100.0 32 ............................ ACCCCAGTACTGAAGTCAACCACATCAACATA 732930 28 100.0 32 ............................ TGCCGCAACGTATCGCCGTTTTCGCGCAGGGT 732990 28 100.0 32 ............................ TAAAGGTAATATAACGATCACTTACATCCGGA 733050 28 100.0 32 ............................ ATGTAGTTCTGACGGGCTAGGTCTGATTTCAC 733110 28 100.0 32 ............................ ATGTAGTTCTGACGGGCTAGGTCTGATTTCAC 733170 28 100.0 32 ............................ ACTGAATCTATCGCGCTTTGAAGTTCTTCGTT 733230 28 100.0 32 ............................ CATGTCAGAAGAAAAAGTAATTATGTACAGCG 733290 28 100.0 32 ............................ TGCAGCATGTCGTATTTGTGGCGGTCATAAAT 733350 28 100.0 32 ............................ TAGATGGCGTGCATATCTGCCATGCCGAATGT 733410 28 100.0 32 ............................ AGAGAATGACTAAAACGAAGAATGGTCAAGGT 733470 28 100.0 32 ............................ AGAGAATGACTAAAACGAAGAATGGTCAAGGT 733530 28 100.0 32 ............................ TTTGCCTAGGATGACGCTAGACCAATGCAGCT 733590 28 100.0 32 ............................ TGTAGCTGTAAGCGAATACAAGCATTTCTTGA 733650 28 100.0 32 ............................ TGTCGACGCAGGCCTAGGTTGCTAACAACTGC 733710 28 100.0 32 ............................ TGCACAGATTCTCAAGTCTGACAAGCTCACAG 733770 28 100.0 32 ............................ GACGGAGATGTGGTGTTCATCGAAGTCATTGA 733830 28 100.0 32 ............................ ATCGCTGACGATAGTCTTGATTTCTCGCCCAT 733890 28 100.0 32 ............................ ATCAACTTCAACACGCCGACATGGCATGTTTC 733950 28 100.0 32 ............................ TATCCGGCAGGCGCCGGCATGCATTACACAGA 734010 28 100.0 32 ............................ GTTATCGAAATTCTCTCTGTCTGGGCCAAAGC 734070 28 100.0 32 ............................ CAGAACGCCGGAAATGGTGGTGCTTATTTCAC 734130 28 100.0 32 ............................ ACACTGCGCAGCCAGCCGGAACACTACCAACG 734190 28 100.0 32 ............................ TGTATCTGCGTTGACAGCAAAGTTGCCGTTAT 734250 28 100.0 32 ............................ ACGACCAGTGGGTATAGAAATTACTGGTGTAT 734310 28 100.0 32 ............................ CCCACCGAGCGCCATAGCCTGCATCTGACCAT 734370 28 100.0 32 ............................ TGGCATTTTAGCCTAACACCCAAGTTGGGTTT 734430 28 100.0 32 ............................ ATCATTTCCGGCGTTCTGGGCTGGACATCAGT 734490 28 100.0 32 ............................ TATTAGGTATCTCACCAGTGATGAGCAATCCA 734550 28 100.0 32 ............................ TTCCAAGTCGATACTATCGGCAAATTCTCTGA 734610 28 100.0 32 ............................ GCGCTGTCATTGATGGCCGTAAGCGCTTTGAA 734670 28 100.0 32 ............................ GTCATTTAGCGTTGTTTTTCCCAAATACTCAA 734730 28 100.0 32 ............................ CACACATCTACGTCATCATCAGTGAAGTGCAA 734790 28 100.0 32 ............................ ATTGAGATTCTTAACACTTACCTTAAATGTTT 734850 28 100.0 32 ............................ GACAGCGGCGGCGCGTTGTCCGGCACACGTTC 734910 28 100.0 32 ............................ GGAGTGGCGTTACGAGGAAGAGATCGATCAAT 734970 28 100.0 32 ............................ CGATGCAGTGCCGATGTAGATCAGCTGGCGTT 735030 28 100.0 32 ............................ GATCTCCACCGGCGTGATCACTTCGAGCGTGT 735090 28 100.0 32 ............................ GCGTGCTGAATTGCTTGAGGTCCCAGCTAAGC 735150 28 100.0 32 ............................ GATCAGTCGTCCCCACTCAAGAAGGGGCGTCA 735210 28 100.0 32 ............................ TATGCACGCAACGCGAGCGGCGCCGAGACTGT 735270 28 100.0 32 ............................ ACGCCGCCCCACGCGGTCATGTGTGCAATGTC 735330 28 100.0 32 ............................ GACTACCCTTACGGATCGGCACGCAACGACAG 735390 28 100.0 32 ............................ GTATGACGGGAGCGCGAACTGGTCTTCCCATT 735450 28 100.0 32 ............................ AGATTATGGCCGTGGGCGCTGGTTTGCTTTCG 735510 28 100.0 32 ............................ GTATTCGTGGATTGCAGCTACATCTAAAACTG 735570 28 96.4 32 ...........G................ ATCAACAGAGTTACAGTTAAGCGTTTGTAGCC 735630 28 96.4 32 ...........G................ TGAAAGGTTCAGCTTTGTACTTGAAAGTTATA 735690 28 100.0 32 ............................ AAGGATATTGGCCTAGTAGTTGCGGGCATTCC 735750 28 100.0 32 ............................ TAACGGGCGACAAGCTGCAAGCATGGGCCAAA 735810 28 100.0 32 ............................ TATATGAAAATAAGAAGTTTTATACTGTTTCA 735870 28 100.0 32 ............................ AACCGGGCTTTTTTTATGCCTCTCGATAATAC 735930 28 100.0 32 ............................ AGCACACTACAAATACCCTGAGCCGTTTAACC 735990 28 100.0 32 ............................ GTTCCGACGAACTTTGAGCGAGTCGGCATGGT 736050 28 100.0 32 ............................ TGCCCAAACACCGTCCGCTCTGTCCCGATAGC 736110 28 100.0 32 ............................ CCCAGAAACTACAGACGCAAGTTTTTTGCCTG 736170 28 100.0 32 ............................ TAGCGAAGTTCATTACCAAACGATGGGCAGGC 736230 28 92.9 32 G..........G................ CATTGCGCGTGACCACGCCATGAAGCCATGAA 736290 28 96.4 32 ...........G................ CATTGCGCGTGACCACGCTATGAAGCCATGAA 736350 28 96.4 32 ...........G................ AATACGATATTGCCTCTTCATTTTCTGAGCAG 736410 28 89.3 0 ...........G.............G.T | ========== ====== ====== ====== ============================ ================================= ================== 103 28 99.7 32 CTTCACCGCCGAACAGGCGGCTTAGAAA # Left flank : ATCTGAACTGGAGTCATTGCCATGGCGCAAAGGGTTAGGAGACTTTACTCAGGTATCCGACATTACTGAAGTTCCGAAAACAGGTGAGTATTGGCTAGTACAGCGTATTCATGTGCAAAGTAATCCTGATCGATTGCGTCGCCGAGCAATGAAGCGTCACGGGCTTAGCTACGAACAAGCGGTTGAGCAAATACCTGACAGCGCAGCGAAAGCACTAGATTTGCCTTTTGTGCGTATTAAGAGTCAATCAACAGGCGAGCAGTTTCCCTTATTTATCAAACAAACCGTGATTTCCGAAGGTTCTCAATCTAACGAAATACAGTTTTCAAAATATGGGCTGAGCTCGACAACGCCTGTGCCTAAGTTTTAACCCTTTATTTAGTGACGCCTGCCAAAGCCCGTAAATACGGGCTTTGCTTTTTTTCTGATAAAAAAGGGTGTTTTTGTGTCTGATAGACAAAGCTCTTTAACAATCAACTAGATACTGATAATTTTGTCTA # Right flank : TTGCTAACCGAAAACCTTTTCTCCTAGAGGTGATTTTGGTCGCCGATGAAATCGCCTCGTACAAAGTGCTTGTTGGTCGCCGATGCAATCGCCTCGTACAAGGGCTTTTGGGTCGCCGATGCAATCGCCTCGTACAAGGGCTTTTGGGTCGCCGATGCAATCGCCTCGTACAAGGGCTTGTTGGTCGCCGATGCAATCGCCTCGTACAAAGGGCTTTTGGGTCGCCGATGCAATCGCCTCGAACAAAGGGCTTGTTGGTCGCCGATGCAATCGCCTCGAACAAAGGGCTTATCTCCCGCGGAAACCGCGGTCCTACAGGTAATTTGGTCGCCGATGAAATCGCCTCGTACAAAGGACTTATCTCCCGCGGAAACCGCGGTCCTACAGTAGACCTGGGTGGCCGATGCAATCGCCTAGTACAAGGGCTTTTGGGTCGCCGATGCAATCGCCTCGTACAAGGGCTTTTGGGTCGCCGATGCAATCGCCTCGTACAAAGGGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCGAACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //