Array 1 1521530-1522473 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053718.1 Proteus mirabilis strain MPE4069 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1521530 29 100.0 32 ............................. CGCTAGCGATATGGCTATTATTAAACGTGAAT 1521591 29 100.0 32 ............................. ATGAGTCTAAACCTGATCGTTATCGTCCATTT 1521652 29 100.0 32 ............................. AAATAGAACGTATCGCAGCTGTTATTTCTGTT 1521713 29 100.0 32 ............................. TTGATTACGTTTCTCTCAGCAAAACAGAAAAA 1521774 29 100.0 32 ............................. CGTTAATGACTTTAGATGTTTATAACCGTTTA 1521835 29 100.0 32 ............................. TTTTACAATGTTTTATTAAATGGTGTTCGACT 1521896 29 100.0 32 ............................. GTGTAAACCGCATCTTGTTCAGGGATTTCTTT 1521957 29 100.0 32 ............................. AATGCGCAGACGACCTTTTAAGGCTTGGTTAT 1522018 29 100.0 32 ............................. GGGAACCGTTCCGCTTTGCCATCTTATTTGCA 1522079 29 100.0 32 ............................. TATCGAATATTCACAGGTTGCATTGATTGCAG 1522140 29 100.0 32 ............................. TATCGAATATTCACAGGTTGCATTGATTGCAG 1522201 29 100.0 32 ............................. GTGAAATGATTGTTCGCAATGATATCCGAGGC 1522262 29 100.0 32 ............................. CATCTTCAAAGACTTTCTGACTGTATGGCTGA 1522323 29 100.0 32 ............................. CGAACGTGATGACCAAACACATGTACACACCA 1522384 29 100.0 32 ............................. AATGGGCTGAGGACGAGGCAATGAACAATGAG 1522445 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : TCCCAATGCAAAACCTGCGCTTGATTGTCCCGTGGTATTTCCTTATGCACCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTGATTATACCCGGGGTGGTACCTCATTTCTTTGTGGGTGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGAGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATACTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCCCGACTTTTTAACCCGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA # Right flank : GATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAATTTTGAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCGAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATGTTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1531387-1531782 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053718.1 Proteus mirabilis strain MPE4069 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1531387 29 89.7 32 ....................A......GA CCGCCACCTATCGCAGCGCCCCATGGACCACG 1531447 29 96.6 32 ....................A........ TTGTATCGCTTTCACTTTGTCATTCTGGCTTA 1531508 29 100.0 33 ............................. AGGGTCTGGTACCAAAATGATCCGCAACTACGC 1531570 29 96.6 32 ....................A........ TTGTATCGCTTTCACTTTGTCATTCTGGCTTA 1531631 29 100.0 33 ............................. AGGGTCTGGTACCAAAATGATCCGCAACTACGC 1531693 29 100.0 32 ............................. AGACTGCAGACGCGCACCGGTAGCAGTTTCTA 1531752 29 86.2 0 .......................A..TTA | CT [1531753] ========== ====== ====== ====== ============================= ================================= ================== 7 29 95.6 32 GTGTTCCCCGTGTATACGGGGATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGTATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCTCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA # Right flank : ATCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATCTGAATAATAATGCTATTATCCTAAGTGAATATTCACTATGTGTATATTTTTGTGCCTAATTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGCTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGCTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCAGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,12] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.90,-11.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [22-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //