Array 1 96646-98985 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXEN01000008.1 Prevotella intermedia strain ATCC 15033 scaffold8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 96646 47 100.0 30 ............................................... AGTAGGAACTTCTCTTTGAAATGTGTCTCT 96723 47 100.0 30 ............................................... AATTTTCTTATTTGGTTCTAGGGATCTTAT 96800 47 100.0 29 ............................................... TATCAGATCTAAAAAGTTTATTGTTTCCT 96876 47 100.0 29 ............................................... TAAATTTAAGTCTGATACTGAATTAGGTT 96952 47 100.0 29 ............................................... AATTCAGTAACTTCTAGGTTTTGTTTGTC 97028 47 100.0 29 ............................................... TCAGCGTCAGAACTAACCACCCTCATTGC 97104 47 100.0 30 ............................................... TAGATGGCTTTGTAAGTTATCGAAAGAGCA 97181 47 100.0 30 ............................................... TACTCTGTCTTGTTCGTTACTTTGCTCAAG 97258 47 100.0 29 ............................................... GCATAAGCCCCTAATTTTCTTCTCCTACC 97334 47 100.0 29 ............................................... AACTGTTCTGGGGCACAGTCTATCACATA 97410 47 100.0 30 ............................................... TTGTACAGTTGCTTACCATTAATGTATGGG 97487 47 100.0 30 ............................................... ATCACACACTTACGAAAATGGCATTGGGAA 97564 47 100.0 29 ............................................... GTTCTCTTTCATTACTCGTCGTTTTTATT 97640 47 100.0 30 ............................................... TGAATTGAATTAGTTGTTGTCATAACTTTT 97717 47 100.0 29 ............................................... GTAGTATCGTGAGTTTCGAGTGGCTGTCG 97793 47 100.0 30 ............................................... CAATGCACTCAACGAGGCTCTTGCACAGAA 97870 47 100.0 30 ............................................... CGTGCCGTCGCTGTCAGCAAACTCAAGGCT 97947 47 100.0 30 ............................................... GGAGCGTTTACGCTGCATAGAGTGCGGATA 98024 47 100.0 30 ............................................... TGTTAATCGTGGCAGTGTTGAAAAGCCTTT 98101 47 100.0 29 ............................................... AAGAGGGCGCAGCTGTTGAATTGTCTAAT 98177 47 100.0 30 ............................................... TATAGGGAAAGGCGAGCACGGACGGCGTTT 98254 47 100.0 30 ............................................... TAGGGATATTTTTACATCAATTGGTCTTGA 98331 47 100.0 30 ............................................... CAAATCCTGCAAGTTGATATTTGTTTCTAC 98408 41 87.2 30 .......................------.................. TAACAAAGTAGGATTGTCAAATGTACTCCT 98479 47 100.0 29 ............................................... GTATAGGTGTTAAAAGCAAAAAATATAGG 98555 47 100.0 30 ............................................... ATGACTAATGAAAGGCCATTGAGAAATAGT 98632 47 100.0 30 ............................................... CAAATCCTGCAAGTTGATATTTGTTTCTAC 98709 44 93.6 30 ........................---.................... CAAATCCTGCAAGTTGATATTTGTTTCTAC 98783 47 100.0 29 ............................................... TCGCCCCTCACCGATGAAGGCAAGGGGGA 98859 47 100.0 30 ............................................... TTTATGCAATGTTCTTGAAGTACTCTTATA 98936 46 89.4 0 ..................................C.-.G....T..A | GT,G,T [98976,98980,98984] ========== ====== ====== ====== =============================================== ============================== ================== 31 47 99.0 30 GTTGTATTTACCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGAAGAATGGTTTATCCTGAATTATAAAGCCTATTAGTGGAAACTTATAGATTTAGTCAATACAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTAAAAGATGGATTTACAATGTTTCAGCTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAAGTACACATCAAAAGAGTTTCCACCTTTATTCCTGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGCAAGAAACCACAAAAGCCAAATGCACCTGGAGCACAATTAGAACTCTTTTAACCCTTCTTTTAGAAACAATAAAGTTCCATTCTTAACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAAGCTTTCGTAACAACACTGATGTTAATTACTTTAAGCCATTTGA # Right flank : GAAAGTTGTTTAAAAAGTTGTAGGAGTGGAATATTTTTCGCACCTTTATACTTGTAAACCAAAGAGTTACAAATAAATACCCACTCCTATGACTGATACAAATTTAATAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTACCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 56109-55415 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXEN01000014.1 Prevotella intermedia strain ATCC 15033 scaffold14.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 56108 36 100.0 29 .................................... GACCACTTGCAACATCTTCTTGTAAAATG 56043 36 100.0 30 .................................... ACTGAGTATTATATTTATCATTAGCATGTG 55977 36 100.0 30 .................................... TATCGGGAGGTAATTCTTTCAATGCTATAA 55911 36 100.0 29 .................................... ATTATGGGCTTGTTCGTTCCTTTTGAAAT 55846 36 100.0 29 .................................... GCATCAATTGCTTTTTCCATAGACGGATA 55781 36 100.0 29 .................................... TCTGTTTTTTCTATTTCCATAATTCTGTA 55716 36 100.0 30 .................................... CATATATGTTTAATCAGTTTCATCAAATAA 55650 36 100.0 30 .................................... ACATTGGCATCAATTGTCGTATTAGATCCG 55584 36 97.2 30 ................A................... AAGTATTGTAATAGCTTGCTAGAGATTGTT 55518 36 97.2 32 ................A................... CTTGATTGTTGCATAAATTTGAAACATAGGGG 55450 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ================================ ================== 11 36 99.0 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TTTGAGAATATTGAGCGTGCAAAGTACGAAGCCATACTGAAGGCGCACCAAAGCATTTATAAATTGCTTAGGTTTATTACAGATACGGAAAACGACGACTGCATATTGGTGTGGGAGCAGCCTAAGGGCGGTGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAGATATACAACAAGGGCAATGGCATATTTCTATCAAAAAAGGTAATGCCACTGATATTCGAATATAGAAGTCTTGTCTATGGGCTGCTACTTACTGCGAAGGACAACCCCGATGAGAAGATAATGATAGATAAACCAGAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTGGAAAGAAAGGAACAAAACATATAAGAATCAGACAGTTAGGTTAGGTGC # Right flank : TTATTAACAAGCAAGGGAATGGAATTGGGGGAAGTAAAAACGGAAGGGGAAACACGCCTTTCTATGAGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCGAAACTATTGCGTAACTATCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAGGAGCGGTTTTACGTTGTGGAAAGTGTAGAGGTTGTGGCGTGGCTTCGGACGGCAGCACAATGGCGGCTTTGCCGATAGTGCGACATTGGCAAGGGTGGTTGGGGCTTCTGCATCGGCTTGATGCGGTGGCTCGTTCGGTTCTGTTGGTTTCGGTTGATGCGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAGGATAAGATGTTTTCTCATATCGTCATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : GTTGCATCTGCCTGCTATTTGCAAGGTAAAAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //